RnoINT0110353 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13961570-13962488:-
Coord C1 exon
chr3:13962401-13962488
Coord A exon
chr3:13961656-13962400
Coord C2 exon
chr3:13961570-13961655
Length
745 bp
Sequences
Splice sites
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
3' ss Seq
TGTCTCTGTTGTGTCCACAGAGT
3' ss Score
11.58
Exon sequences
Seq C1 exon
TTTGTTGCCTCAGGAATCCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq A exon
GTTAGTTCCTGGTTTTCTTATTCTCCAGTTTCACATGCAAGGGCCGCACATGTTAGGGGCCCTATGCAGAAAATAACGCACTGGCCCCGACCCAAAGGGGTGCCCCAATATCCCACTGCCAATTACAGAAAAACAAGGATTGTCAGGCACCCTAAGACTGCTATTGGGGTCTCATCACCCACAAGTTCTCCTGAGAACATGGGTTAGGGCAGGGTTAGATAATATCCCAGTTCCAGTCTGGGCCAAACGGGGCTAGGGTGTGGGGGCAGCGCTTTCTAGATGGGATGTTGAAGGCATTGACTGAGCCCAGCCTAGAACCAGGTCTCAGAACATATTTTCCTTCTTCGATTATCCTTACTGAGAGCCTCCTTGTGGATGGTAGTGTTAACGGTGCCTCTGCACTCCGCACTTTCACAGCCACAATGGAGTCCTAGCTTCTTCCTGTGGCCCCCAGTAAAGCAGGCTCTCAGTCATTCCCATTTTGCAAATGGAGGCAGCTAAGACCCAGAGAGGCAAACGAGAAATCAGGCGGCTTGGAGAAGAAGTCAGGACTAGACACCATGGTGACTTAGCTCTCTGTCCACAGTTCAGAGTCCAGAGGAAGTGGCAGGATTTCCCTAAGCCCTCATGGCCCTGGCTGAACAGCAGGCGCCCATACACCCCTCAGATGGGAGAAAGGCTGCTTGGGGAGAGGTAGGTCTGTTGGTCCGTCTGTTGACTGACCCTGTCTCTGTTGTGTCCACAG
Seq C2 exon
AGTGACTTCACCTCAGCCTGGAGCACGGACCACCACCTGGCCAGCATATTCGACTTTACACTGGATGAAATTCAGAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]