HsaINT0123947 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120861089-120862005:-
Coord C1 exon
chr9:120861918-120862005
Coord A exon
chr9:120861175-120861917
Coord C2 exon
chr9:120861089-120861174
Length
743 bp
Sequences
Splice sites
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
3' ss Seq
TCTCCTTCCTGTGTCCACAGAGT
3' ss Score
11.82
Exon sequences
Seq C1 exon
TTTGTTGCCTCACGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
Seq A exon
GTTAGTTCCTTGTTTTCTTACTCTCCATTTTCATACGCAGGGTCAGCACATATTAGGGCTTCCTGTGCCGAAAACTAAGTCCCCCAGGCCCAGAGGACTCTCTCATGTCCCTTAAAGAAGCCAGTCCCTATTACAGCTAAGCCAGGCACTCTAAGACCCCTGCTTTATCTCCCCCCAAGTTCTCCCAGGAATCCAAAGTTGGGGGGCAAAGGCAGGTAATATTCTTGTCCCCACTGTCCAGGTAGGGACACTGAGGGAAGGGTGGGGCAGTGACTTTCCTGAGGCCACACATCAAAGTGGCAGAGCCCAGCCTGGAACCAGGGTTCCAGAGCACTTTCTTTCCTCCTTCAGTAACCCCACCACCTCCCTGAAGCCCTCCCTGTGGGCAGTAGTATTAGCAATGCCTCATGTCCCAGCACTTTGCGGTTTAGAAGCATTATTTAATTTTACTGCACTTCCTGACATCTGTAAGAGTGAAGCAAGGCAGGGGTTATTGTCCCCATTTTGCAGTTGAAGTAACTGAGGTCCAGAGACGTGAAGGTCGTACAGTCAGCTAGAGACAAAGGCAGGGCTAGAACTGGGATGACTTTGGCTCCCTGGTCAGGACTTGGAATAAAGGTGATGGTCTTACCCTAGGGAGGGCCCAGCCCTCAGCGGCCCTGGCTGGATAGGAGGCAGCCTGTGTGGGAGGTGGATTTGATACTCGCTGTCTGACCCTTCCTCTCTCCTTCCTGTGTCCACAG
Seq C2 exon
AGTGACTTCACCTCAGCCTGGAGCACCAACCACCACCTGGCTAGCATATTTGACTTCACGCTGGATGAAATTCAAAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development