BtaINT0110737 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112155846-112159136:-
Coord C1 exon
chr8:112159055-112159136
Coord A exon
chr8:112155942-112159054
Coord C2 exon
chr8:112155846-112155941
Length
3113 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCAGGGTGCCTTTCTTCCAGCTG
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTCAGCAGTTCTAAGCAGAGCTGCCTCGTAACTTTTGAAGATAATTCCAAATACTGGGTCTTATGGAAGGACATACAGCATG
Seq A exon
GTGAGTATTGCTGTGACTCCTCACCCCTGCCCCACTCTCCTCTTCTGCCTCCATTTTCTTCCTGCTCTCCTTCTGTCTCGTAACTTCCGGCATCTGGCCGTGTCCTTGGAGATTACCAGTTGTACGTTTACACGAGAACTCATTTATGACACCTGTCATCCTCTTGAGCATTCATCCCTCACGAGGGAGGCAGGCAGATGGAGAAGGCAGCTTGAGGAGGGGTGGGAGCAGGGTTGTGTCCCAGGCCTGTGTGTATTTCCCGGCTGCCCAAAGCTCTGGGTCCCTCTGGGGCTAGGAACAGAAGGGGCCCAGGCAATCGGAATTGAAACCTTTCGGTGTAAGCACAGTGTCCTCTATCAGCATGTTAAAAAACGAGGAGGCAGCTCTCTCCATGGGGGAGAGACCCACCAAGCCTGGAGCAGGCAGCGTGATGATGACGTAGCGGGATGGAGCTGGGCCCGTTTCCAGGGCTGAAAGGGAGCTGGGTTGGGTATCATCCCTGCCCTCAGACGGCTGACACTGTCTTACAGAGATGACGAACTGGGGGCATTCTTGCCACCGTTCTCCCCTGCCACGTGCGTGACAGACGTCACTGATCAATCAGAGCACTCATTTTCAACACGGAGCACCAGGCAGCCACTCCCAATGAGTTACCGTGTGAGAACAGACCTTTTTACCATTTATGCTCTAACAGGAGGACTGACATGGTGGTATGTGAGGAAGAGACAGGGTTTGGAGCCCGCCTTGGACCAGGCTTCCCCGATGGCTCAGCAGTAAGGAATCCATCTGCAATGCAGGAGACACAGGCCATACGAGTTTGATCCCTAGGTCAGGACGATCCCCTGGAGAAGGGAACGGCAACCTGCTCCAGTATTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGGCAGGCTGCAGCCCATGGGGTCTCAGAGTCGGACACGACTTAGCAACTACAGCACCACCAGTGGTGTGGAGTTACAGGGAGTCAGTTTCTGAAGAATCTCTTACCTTGAGAGATGATTTCAGGAGCTTGCCAAGCAAAGACCACAGGACCCAGCCAGTTAGAAGAGTTTCCAGGGTGCCTTTTTCTCCAAGATGTTGTGGCTAATGCAGACTGATGCTTCTCCAGGCCCTTCTCACCCTAAATGTACTGTTTCAAGATCCAAAGCAATGAGGGGCTCCTCTCCTGGGCTGCCTGCTTATCGAAAGCAGAAGGAGCCAGCTGATGAGGAAAGACAGTTCACCTTAGCAAACCGTGAGTGTGCCGGGCACCAAGAAGGTGCGGCAGTGCTCAGCGGAGGAGCTGCGTGGACCCCAGATCACTGCTCCTCACGGAGGTCGGGCCCTCTGCGTCCACCCGGTGAGAGCACAAGGCTGAGCTTGCTGTAGGTGCCGACCCACGGCTTCATTAAGCCAGTGGAGACTTGCTGAGACCACGGTGCTCTTGATGCTCTTAAGAAATATAACTGCTGTCAACTGGCAAAAGGTCATTTAGTATCTAATAAGTAGTAAAGGAATGGAGAGTAACACAGTTACTATAATAAGCCAACCTGTTATTTCCTTTTCTAATCATATGAATGCGAGTTTACATGAATTCCTAAGATTCAAACTTTTCATTTTTTAAGTAACTGCTATATTTTCCTGGGATCATATTCAGGAATAAGAGGCAAGAGACCATTTATTCAACAAACAGGTCATGAACACATGTGATGTGCCACACCCACGTGAGGTCCTGGGGACATAGATGAACAGATACCTTTTGTGTCCTTACGGAACTTTCCATCTGCTGAGGGAAATGAGACTGAAACACACATGAAAACATACTTTATTCATTCAAACCCTTCACACACAAACACATGTTTATTCTTCAACAGCAATTGAACAAACTTAAAATTGTTATGGACCATTGAGACAGTTTGAAATGTGAACGCTGAATTTGTTGATGATACTAAGAAATTATTTTTAATATTTGGGTTCCATAAAGGTACTAGTTTTTTTTTTTTCTTTAGGAGAGTATAATCTTTCAGAGATGCCTACTGAAATATTTATGGAAATGATTGGGTATTTGGGGCTTGATTCACAACAAAACAGGAGGGGTAGTGGGTGGGAATATAGTCAAAACAAGACTGGCTGTGAATTCGTGACTGTTGATAAGAACATGGAGTTTCGTTATAACTTTATTATTATGCAATAATAAAAAATGTTTAAAAGTTATTTAACATAAAAACTTTAACAAGTCAAGTTAAATTAAGCAGGAGAGGCAGAATGGTATTGTCAAAAGAACAAATGATTTGGGGGACTTCCCTGGCGGTCCGGTGGCTAAGACTCTGTGCTCCCAATGCAGGGGGCCCAGGTTCAATCCCTGGTCGGGGAACTAGATCTGACATGCCTCAACTAAAAGAGAACCTTTGCCACAATGAGTATTAAAAAATCCTACATGCTGCAACTAAGACCCTGCATATCCAAATAAATAAATACTAAAAAAAAGAAAAATTATTTGGGACTTCCCTAGTGGTCTAGTTAGGAGCATCCCCTGGTGCCTCAGACAGTAAAGCGTCTGCCTGCAATGCAGGAAACCCGGGTTCGATTCCTGAGTTAGGAAGATCCCCTGGAGAAGGAAATGGCAATCCACTCCAGCACTCTTGCCTGGAAAATCCCATGGACGGAGGAGTCTGATAGGCTACAGTCCATGGGGTCGCAAAGAGTCGTACACGACTGAGCGACTTCACTTTAGTGGTCCAGTGGTTAACACTCTGGGCTTTCAATGCAGGGGGTGTGGGTTCAATCCCTGGCTGGGGAACTAAGATCCTGCATGCCTTGAGGTGTGGCCAAAACAAAACAAAAATCAAACAAGTTGATGTCAAACAGTGGTGGATTTGAATCCCCCTTCTGCTTTCTAGCTGAGCAAGGGACTTAACCGCTCTGAGCCTCAGTTTTCCCCATCTTTAGAATGGGGTGCTGGTCACAGGCAGCTCAGCATGGTTGGAGAGGCTCAGTGAGTCGGCCTCTGGAGCCCAACACTCAGACCCAGAGGCGCGGCGCCTGGTTTTAAGACCGTGGGTCATTCCCATGAACCCAAGCTGACCACGCAGGGTGCCTTTCTTCCAG
Seq C2 exon
CTGGTGTTCCAGGGGAGGAGCCCAAGTGCAACATCTGCCTGGGGAAGACATCAGGGCCCCTGAACGAGATCCTCATCTGTGGGAAGTGCGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(46.6=100)
A:
NA
C2:
PF150571=DUF4537=PD(17.2=30.3),PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(44.4=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]