GgaINT0125004 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8291724-8292003:-
Coord C1 exon
chr17:8291922-8292003
Coord A exon
chr17:8291820-8291921
Coord C2 exon
chr17:8291724-8291819
Length
102 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCTCTTTCTCCGTCCCGCAGCCG
3' ss Score
10.95
Exon sequences
Seq C1 exon
GTGAGCGGCTCCAAGCAGAGCTGCCTGGTGACGTTTGAGGACAACTCCAAGTACTGGGTCCTCTGGAAGGACATCCAGCATG
Seq A exon
GTGAGCGCCACCCCGGCGTGCCCTGCCCTGCTCACCGCCCCCCGGGAGCCCATGTGCCGTGGGCAGCACTGTGGGGCCATCACCTCTTTCTCCGTCCCGCAG
Seq C2 exon
CCGGCGTCCCCGGGGAGGAACCCAAGTGCAACATCTGCCTGGAGAAGACATCAGGGCCCAGGAATGAAATCCTCATCTGCGGGAAATGCGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(46.6=100),PF0013017=C1_1=PU(5.8=10.7)
A:
NA
C2:
PF150571=DUF4537=PD(17.2=30.3),PF0013017=C1_1=FE(64.0=100),PF144461=Prok-RING_1=PU(68.3=84.8),PF0062824=PHD=PU(44.4=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCTGGTGACGTTTG
R:
GCATTTCCCGCAGATGAGGAT
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]