DreINT0113289 @ danRer10
Intron Retention
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12354906-12356730:-
Coord C1 exon
chr8:12356649-12356730
Coord A exon
chr8:12355002-12356648
Coord C2 exon
chr8:12354906-12355001
Length
1647 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TCTCTCCCTCTTTCGCACAGCTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTGAGCACCTCAAAACAGAGCTGCTTTGTGTCGTTTGAAGACAACTCCAAGTTCTGGGTGCTTTGGAAAGACATACAACATG
Seq A exon
GTAAGAAGTCTGCGTGGATGTGCGTTATACAAAGCTATTTTTTTTAGCATTTGTTTCTTAACTATCCACATTTTTTTCCATATATATATTCTGCATTTGAATATTTGATGAATGAATTATGAGGAGAGTTCTGACACCTCATATTTAGTTTTTTTAATTATTCATATGAAGCATTACAGGGCATAGGAAAAATATAAATGCAGTTGAAGTCAGAATTATAAGCCCTCTTTGAATTTTTTTATTCTTTTTAAAATATTTTCCAAATGATGTTTAACAGAGCATGGAAATTTTCACAGTTTGAGTGATAATTTTTTTTTCCTCTGGAGAAAGTCATATTTGTCTTATTTTGACTAGAATAAAAGCAGTTTTTAATTTTTTAAACAACATTTTAGGGACTAAATTATTAGCATCTTTAAGCTTTATTTTTCCTTGATAGTCTACAGGACAAACTACTGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAAATAACCTATTTAAGCCTTTAAACGTCACTTTAAGCTGTATAGAAGAGTCTTGAAAAATATCTACAAAAATATAAGTCATTGTAATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATAAGTTATTAAAACTATTATGTTTAGAAACATGTTGAAAAAATCCATTAAACAGAAACTGGGGGAAAAATAAACAAGCAGTCTAATAATTCAGGGAGGCTAATAATTCTGACTTCAACTGTATATATATATATATATCAGCAAGAAAACACTTTCTCAGATTCACTGAATTGATTTATACAGAACTATATACTTAATATGCAGTATAACAGTAAAACTTTTTTCACCAAGTACCACCTCAGAAAAAATGGCTCTCCATTTACGCACCACCTTAATAACTAGTATTCCAGTATTGAAATACAGTAGCGTAGTAGGCAAAAAATCTGATTGATTCTTAATTAAAATATTTATTATTGTCATCATCCACTTAAAACATTAAAAATAGTACATTAACATTAGCAGTCATGTGCTTACAGATAAAAACAAAAAACAAACAAAAAAATCTTAACATTTAAATTAAGTTAATCAAAAATGGCACTGTTCTTAAAAAGTAAAAAGAAAACTGCTGTATGTAGCGTGTTATCGCTTGCGTCAAATGGTTAAAAGTGTGTTCATTTTCTTTTACTATTCAGCAATTCCTCCGCGTACCACTAGAAGGAAGCCTGCATACCACTACTGGTACATGTACCACAGTTTGAGAACCACTGCAGTATAATATACCGATTAACTGTAACTAAGTTACTTAGAAGCTAAAAGTAATCCCCTACATTACATTTAATTGTGAAAAGTAGTTGCTTTGTAATTAATTGCACCCAACGCTGCTTGTTGCACGACATTTAATATTATTTTCGAAGTCGATTTGAAGTTGAATTGAAGTTCCCTAAACCGCAAGTTCAACTCATAATTTAAAATACAGTCATCTCACACAGAGAAAAAAAAGGTGAATAGGATTAATCCATCAGCAATCCAGAAAGCAGATATGTTGTGTGATATGTCAGTGTGTCCTGCGAGATGTCTTTGTGGCAGTATGGTATTGGTGCTTTGTGGCAGAGGAACTGAAGCTTTATTCTCTCCCTCTTTCGCACAG
Seq C2 exon
CTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050:ENSDART00000142150:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF144461=Prok-RING_1=PU(66.7=84.8),PF0062824=PHD=PU(46.2=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]