MmuINT0118761 @ mm9
Intron Retention
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34762525-34766765:-
Coord C1 exon
chr2:34766684-34766765
Coord A exon
chr2:34762621-34766683
Coord C2 exon
chr2:34762525-34762620
Length
4063 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGAGGGGACTTCTTTTTCAGCTG
3' ss Score
5.94
Exon sequences
Seq C1 exon
GTCAGCAGTCCTAAGCAAAGCTGCCTTGTGACTTTTGAAGATAATTCCAAATACTGGGTCCTGTGGAAGGACATCCAGCATG
Seq A exon
GTGAGTGTCCAAGTGTCTACCGCCCCTCCCCCATGCCTGCTCCTCTCTGCCTTCAGTTCTTCCTTCTCTGTCACCTTTTTCTCTTGCCATCTGTGTTAGTCCATGAACTCCGTGCCTTGAGTACACATCTTGGGCCCATCAGAAAAGATAATTAAACGTCTACTCATGGATCTCTGTTCTGAATGCTCACACTTCAGGCGGGGGGGGGGGGGGGAGCAGGGCAGGTGGAAGAGGAGCTCCGGCTTGTCTTGGCACTCAGGGTGCTTGGACCAGGTCTCAGGCCTGCAGTTTGTGTCCTTGAATGGCGTCTGCTATTCTGGCTCTCCTAGAGCTAGAGAGGAGGAAGAGGCCAGAGGAGAAGGGCTGCCAGTTAGAGACTTGAACTGTGTTCCCTATTTATATGTGAAGAAAATGGGTGGGGGGTGGGGGGAGTGTAGCCAGGAAAGCATGAAAGTGGCCATGCGGAGAGGGAGCAGGGGCATCGGCCAGGATGAAAGGGAGCTAGACTGAGTACCAGCCCTGCCTTCAGATAGCTGACACTGTGCTATAGATATGGCCAGTTGGGGTCATTCAATCTACCTAGGACAGACTTGGGTGATCACTAGTCATGGTACCTATGTGTTTTTATCATGGAACTATGACCCTGGCGTAGCACCCATGACCACTAACATGAGAGAAGAAACTTATTGAGTATCATTTATGATGTGGCCCACTGAGGCAGGTTCTAGGGTCAGACAGACTCTGGACCTCGTTCCCAATCTATCTACTACAAAGCTACACAGCCTTGAGCAATGATGTCACTTTTCTAACGTCGCTGTTGGGAAGCTCAGATATGGTGATGCATGCATGTAGAATGCGCGTCCCAGTGCTGCTACACGGTAAGAAAAATGTTTATAAGAATCTGTTACTGAAAAAGATTATTTCAAGAAGCCAGCCAAACAGGCCACAGGGTGAAGCCACTTTTTATGTCTTTCAAACTATTTTTTTTTCTCCAAAATGTGGCCAGGGGATACTGTTTTTTTCCCCCTCTAGCCCCTTGCAACCTAAATCTGTTGATGCAAAGCTATAAGCATTCCCTGCTGGCTACACTGCTATGAAAAGCACAAAACTCCAGCAGCAAAGGAAAGATGTTTCAACATTCAGGGTCTAGAAAGCATCCCACTGTGTGCCAGGAACCAGGTGGAAGCATCCCACTGTGTGCCAGGAACCAGGTGGAGCGCAGTAGGTACGTAGCTAGGAACAGGTTGTCCCATAAATAGCCGATTGTTCCTGGCAGGCAGGTGAGCCTTTGGCATTCCCTAGGATGAGTGCTCAAGGCTGGGCATAATGCAGTTAAGATATATCACTTTATCAAGGAATCAGAGGCTCAACCACCTTCCTTGGGTGTTGAACAAGGCAAGGTCCTTAGTCAACAAATACGTCTTGAACCACCTACTACCTGCCAGAAATACCATTTCTGCCTTTACAGAGCTTTCATCCTAAGGAGAATGAAGAGGGAAGATTACCAGTTCAAGGCCAGCCTGAGCTACATAGCAAGACTCAAAATCTATAGAAACAAAACCAGGAAATTTTTCAGGGAGCCTTCTGAATAAGAAAACAGAAGTAGGGCATCAAGATGTATTTAAGGGGCTGGAGAGATGGCTTAGCAGTTACCAGCATGCACTGCTCCTGCAGAAGACCTGAGTCTGGTTCCCAGAACCCACATGGTGGCTCACAACCACCTGTAAATGCAGTCCTGGGTGATCCAACACCCTCTCTGACTTCCACAGGCGCCAGACTTGTGAGTGGTGCACACACACATCCATGCAGGCAAAACCTGTACTCAGAAAAAACCCAATGTATCTTTCAGAGAAAGCTGGCATAGTGGTTCATACTTGTCATCCTAGCTCTGGAGAGGTAAAGACAGGCAGATAGCTGGAACTCACTAGCCAGTCAGCCTAGTCAGTGAACCCTGCATCGCAGTGAGACACTCAGAAAGAAAGATGGCTGCCCCCGACCAATGTGACCTGCACACATGTGCATCTGCACACACGCTAACCTTCATGCATATATAGACACCGGAAAGTTGCATTTGTAGGTCAGGGTATGCGTTACCTAGAATGTACAGTCTTTGGTTTGATGCCTAGCATCACTGCACCCTCCAAAAGGAGAAATATACTTAACATAGCCATTCAAACACTTGAGATATAAAAATATATTTAACAAAAGAAGACAAAAAAGGGAGCCGTTCCATAACTGTATTAGCAGTTGGGGTTTACTTCAGTGGGAGAGAGAGTACCCAGCAAGAACAGGCTCTGGGTCTAAACCCCAGGTCTAAAATAAGCTAAGATAAACAAATTAACTGGTCACTAAATCTGGACTTTGTATTTTGATTCAAAACACAAATTTGTAGTGACATTTCAATTTCCTAGACATTTGGAAATAAAAGTGACTTCAGATGCAATAAAGGCTATGCAGTGTGCTTTAAGAGAACTCTGACTAGAAATGTAGCTGCAGTGGTTACAGAAAGATGAATGGGTGTCTGGGTCTTGAATTGAAATAACAGGGAGGAGATGTGAGTGAGGCTGTTGTTTAAATAGGACTTTCTGTGAGTTCACGATTGATGGGAACATAGTCTCATTATAAACCTACATTTTTAAGCTGGGCGTGGTGGCTCACACCTTCAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTATGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTATTGTCTCGAAAAACCAAAAATAAACCAAAAACAAAAAAACCTACATTCTTATCACAAAGTAGGCATTTTAAATGTCACTTGACACAAAAATGTTTAAACATAAAACAGGTTGGAATAGGTAGGAGAGGGAACTGGATGTGCCCGAGGTGCAAAGACTTAGCGGAGCAGTGGTGGTGTGTTTGAATCTCACTCTCGTGCTTCCCAGCTGAGCAAGGACCCTGACTTCTTGAGCCTCAGTTTCCCCATCTTTGGAGCAGGTGTTAGGAGACACCTCTGAGAGCCTGGGGAGATTCATCGAGGCTGCTTGTGGGGTGGGGTGGGGTGTGAAGCGCGGTGCTCAGCAGCTCAGTTCCTGCTCTGCGATTTTTATTATGATTGCTTTAACAACTAAAGTCCCTGACAGTTTTATACTGGTACATTCTGGTTACACTCTCCTCAATCCTCCCTAGTGCTCCCCCCCCATCTCTTCCCTCCTCCCTCCCTGCCCCTTTCCCAGATGGTTGATGTTTGGTTTTGTTGTGTGACCCCTTTGGTCATCTGTGTGTCTGTTGGACCGGGACTACCTACTGGAATCCAGTAGAATCAATGGGTACACAGCTGAAGGCAGTAACTCACCATCCCCTCCCCAAATGTATCAATATGAAATTGCTCAGCAGGGCAGGGTCTTCACAGTGAGCTGTTCACCCACTCGCCCAGGCCACACTTCCCACAGATGAGGATCATGATGGGAACATAGAGTCTCATTATAAACCTACATTCCCCCCCCCCCCAGACAGGGTTTGCTCAGCAGTGAAAGATAGGCACCCTGTGGCCCTGCCGTCAATATCTGGTGTGGATGGATCCATTCTTATGTAGACCCTTTGTCATCTGCAGTTGCTAAGAGTTCATTACAGGGGCTACACTCAGACAATGGCATTTCACAGTCCTTATTCCGGCCTCTCAGCTCTTACGTTCATTCTGGCCCCTCTTCAAGAGTGTCCCATGAGGGTATGGTGTGGAAGTCGTGTTTAGAGCTGAGCTTCAAGTGTCTCTTATTCTCTGCATTTTATACAGCTGTTTCTGCACTCTCCGAAGCTCACAGGAAGCAGACGCATCTCTGGTTAAGGCTGAATGGGTATAACGTATATCTAGACTCTGTGTCAACTTAGCTGAACAGCAGAACTAAATTTCCCAGTAGGGGGCCTAAGAGCTCCTCCCCAGATCCAAGTGTAGATTCCCTCCCAGCAGATGATTCTGACTAGTTCTTGGTGGTGTGAGCTGGATCTGAGTTGAGGGGACTTCTTTTTCAG
Seq C2 exon
CTGGTGTTCCGGGAGAGGAGCCCAAGTGTGACGTCTGCATGGGGAAGACTTCAGGGCCTATGAACGAGATCCTCATCTGTGGGAAGTGTGGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873-Phf19:NM_028716:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(47.4=100),PF0013017=C1_1=PU(4.3=7.1)
A:
NA
C2:
PF150571=DUF4537=PD(15.8=27.3),PF144461=Prok-RING_1=PU(71.8=84.8),PF0013017=C1_1=FE(69.6=100),PF0062824=PHD=PU(44.4=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: