BtaINT0110741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112152041-112152984:-
Coord C1 exon
chr8:112152889-112152984
Coord A exon
chr8:112152110-112152888
Coord C2 exon
chr8:112152041-112152109
Length
779 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
GCCCCTTTTCACCCCCACAGGTT
3' ss Score
11.87
Exon sequences
Seq C1 exon
ATGGTACCTGCGGATGCTGCAGTGTTACCGCTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGTCTCAATGAGCCCATGATGTTCGGTGACCG
Seq A exon
GTAGGTGCTTGTCTGGTCCGACTCAGCCTCGGGGTTGTGGCGGGGGATGGGGGCAGAGGCTACAGCAACTCCTTCAGATTGCCTGCCAGACCTCAGAACCCTGGGCTCTGGGACAGCGTAGCCTCCTGTCTACGGAGGCTGCTCAGGGTTGGGAGGTCTTCCCCGTAGAGGGACCAGCTGAACCACATCCCTAGTCTCCACTGACTTGCGGGGGACCTTAGACAAAGCCCTGCCTTCCCCAAGCCCCAGTCTCTTCAAGGGTCTGGGAAGTGGGAGAGACACAGGCCTGCCCTACCCCTGCCCAGGATTGTTGGAGGAGCCACAGCGGGGATGGATGACTTGATCTGGCCTCTAACAAGGGGGCTAAGCTAGTGGAAGGTGTATGTGTGTCAAACCAGATACTGTGCGTGTCTTGGTTGGTGCCTCATGAGGTTTGCGACTAAAGTAGGTGTGCGTGCGTGCACGTGTGCACGTGTGTGTATCTGTCTCTGTCTCTCTCTCAGGCAGAGGGGAAGAGGTGGCCCCTGCAGCCCAGCCGTGTGTGGCTCCCTCTGAGCTCAGCCACAGTCCAGGGCAATGCTGTTTGGGAAAGGGTTTGAGGTAGCGGTTGGAAGGGGTGGGGAAACAGTTCTTGGTCCCTGTTCTGTCCCATCTTTGTCCCCTCCTCGGAGGAGATGAAGACAGTGCTGACCGTGAACAGTAGGTTGGGGGCGAGGGTGCAGGACTAGGGTGGGATGGCAGAGCCCCTCCTACCACTGGGCCCCTTTTCACCCCCACAG
Seq C2 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGCAACCAGGGCCCAGAGTACATTGAGAGGCTGCCCCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]