MmuINT0118765 @ mm10
Intron Retention
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34903352-34904150:-
Coord C1 exon
chr2:34904055-34904150
Coord A exon
chr2:34903421-34904054
Coord C2 exon
chr2:34903352-34903420
Length
634 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
CCCCTCTCTTCTACCCGCAGCTT
3' ss Score
11.38
Exon sequences
Seq C1 exon
GTGGTACCTTCGGATGCTACAGTGCTACCGGTGTAGGCAGTGGTTCCATGAGGCTTGCACACAGTGCCTTAGTGAGCCTATGGTGTTTGGAGACCG
Seq A exon
GTAGGTGATCAGCTTCCAGATAGCATACAAAGGGGGGTCTGTGATAGCCTAGACTTGTCAACAGGAGACAGCCAAGATAAAAGGGACCCTGGCTATGCTGGGCCAGCAGACAACAAAGGAACATGCTGGGCTACATGCCTAGTTGCTGCTGATTTGTGGGGAACCTCAAGCACATTCCTGCCTTTACAAGTGCCAGACTCTACAAATATCTCAGGAAGGAGAGATGAAAGTCTCTGCCTTAGCCTTACCAAGAGTTACTGTAAACACCACTAGGGAAATGGATGGTCTCTAAGGGATGGGCTAGGCTAAGTCAATTATTATACTTCTTTGGCTGGTGGCTGGCAAAGGGGAGGGGAGGGGTCTCAGAAGGGACAGTGGTGACCACTACCACCCAGCCTGTGAACTAAGTAAGCTAAGTTCTAAGGCAGTGATCTTTGGAGAGGGGTGGAGACATATTCCTTGATCCCTGTCCCCTCCACTGTTCAGAGGCTGGCAGCCCAGAAGTGGATGCTATCTATCTATGGGAAGCAGGTGGGAGGGGGAGAGGTGGCCTGGGCCAAGGAGCAGAGGCGCTCCCATCACAGACCCTCCGGTCACAGACCCTCTCCTCACAGCCCCTCTCTTCTACCCGCAG
Seq C2 exon
CTTCTACCTGTTCTTCTGCTCCGTGTGTAACCAAGGCCCAGAGTATATTGAGAGGCTGCCCTTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873:ENSMUST00000028232:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types