RnoINT0110361 @ rn6
Intron Retention
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13966888-13967677:-
Coord C1 exon
chr3:13967582-13967677
Coord A exon
chr3:13966957-13967581
Coord C2 exon
chr3:13966888-13966956
Length
625 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TCCCTCTCCTCTACACACAGGTT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTGGTACTTACGGATGCTACAGTGCTACCGGTGTAGGCAGTGGTTCCATGAAGCCTGTACACAGTGCCTAAGTGAGCCTATGGTGTTTGGAGACCG
Seq A exon
GTAAGTGATGATCTACTAGATATCACACAAAGGAGGTCTGTGGTAGCCTAGCTTGTCAGCAGGAGACAGCTCAAGATAAAGGGGACCCTGGCTATGCCGGGCCAGGAGACAATGAAGGGATGTGCTAGGCTACATGCCTACTTGCTGCTGACTTGTGGGAAATCTTGAGGACATTCTTGCCTTCACAAGATTCAGATTCTACAAATATCTCAGGAAGGAGAGATAACAGTCTCTGCCTTAGCCTTACCAAGAGTTACTGTAAGCACCACTAGGGAAATGGATGGCCTCTAGTTAGTAGGGCTAAGCTAATGGGAGATATTATATCTGCTAAATCAAATATTATTCTTCTTTGGCTGGTGGCTGGCAAGTAAGTGTGTAAGTGGATGGGAGAGGTCTCAGAAGGGACAGTGGTAACCACTATTGCCCAACCTAGAAACTGAGCTGAATTCTAGGGCAGTGACCTTTGGAGTAGGGTGGAGACATATTCCTTGGTCCCTGTCGCCTTCACTGCTCAGAGGCTGGCAGCCCAGAAGTGAATGCTATGGGAAGCAGGTGGGAGGGGGACAGATGGCCCGGACTGAGGGTCAGAGGTCTTCCCATCACAGTCCCTCTCCTCTACACACAG
Seq C2 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGTAACCAAGGCCCAGAGTATATCGAGAGGTTGCCCCTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874:ENSRNOT00000025528:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]