GgaINT1021407 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8290818-8291094:-
Coord C1 exon
chr17:8290999-8291094
Coord A exon
chr17:8290887-8290998
Coord C2 exon
chr17:8290818-8290886
Length
112 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGT
5' ss Score
10.06
3' ss Seq
CCATCCCCACTCTTTTCCAGGTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGTACCTGAAGATGCTGCAGTGCTACCGCTGCCGGCAGTGGTTCCATGAGGCGTGCACTCAGTGCCTCAGTGACCCCATGATGTTCGGGGATCG
Seq A exon
GTACGTCCCCGTGTCCCGCAGGTCCCGGCTGCATCTCCACACTAGGGCAGGTGCTGCATCCTGGCAGGGCGATCCCACACCCCTTATGCTCTCCATCCCCACTCTTTTCCAG
Seq C2 exon
GTTCTATGTGTTTTTCTGCTCTGTGTGCAACCAGGGACCTGAGTACATCAAGCGCCTGCCCCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTACCTGAAGATGCTGCA
R:
CAGGCGCTTGATGTACTCAGG
Band lengths:
154-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]