BtaINT0111567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:504944-505276:+
Coord C1 exon
chr25:504944-505075
Coord A exon
chr25:505076-505155
Coord C2 exon
chr25:505156-505276
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CCCGCTGAACCTGCTTCCAGGAA
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGTGTTCCGGCCGTGGCCACTGTCCTTCATCTGGAGCAAGCTGTCTACCTGCGAGCAGCTCAGGCATCGGCTGGACCAGCTCACGCTCGTCGTCAGTGCCCACAGGGCCGAGGGCCCTGCCCAGCTGATGAG
Seq A exon
GTGCGGGCGCTGCGGGCCCCCTGCCCCCCACTGACCCCTGCAGCTGCCTGCACACTCACGCCCGCTGAACCTGCTTCCAG
Seq C2 exon
GAAGGCCAACACGCTGGTCTCTGTGCTGCTCGACATGGCCCTGGGCCTCCTGCTGCTGTCCTGGCTGCACAGGAAGGACCGCTTTGCTCATCTGGCCGAGGCGCTCGTCCCTGTGGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAAGCTGTCTACCT
R:
CTTCCTGTGCAGCCAGGAC
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]