MmuINT0119575 @ mm9
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26071703-26072079:-
Coord C1 exon
chr17:26071948-26072079
Coord A exon
chr17:26071824-26071947
Coord C2 exon
chr17:26071703-26071823
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TTCCCTGACTTTCCTTCCAGGAA
3' ss Score
12
Exon sequences
Seq C1 exon
GCTATGGAAGCTGTGGCCACTTTCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCATCACCGGCTGAAGCACCTCTCCTTCATCTTCAGCACGGAGAAAGCCCAGAATCCCATGCAGCTGATGAG
Seq A exon
GTATGGTTTCCTATACAAGGAAGGGGGCGGCCCATCCTCTTCTTCCTCTCCGCTTTGCATTGTGCCTGCAGCCAGGCCTTTCAGGCTGTGTCTGTAGCTGTGCTTTCCCTGACTTTCCTTCCAG
Seq C2 exon
GAAGGCCAACATGCTGGTTTCTGTGCTACTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAATAACCGAATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-Pigq:NM_011822:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(0.1=0.0)
A:
NA
C2:
PF0502410=Gpi1=PU(21.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTGGCCACTTTCCTTC
R:
ATCAGCCACAGGGACCAGG
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: