GgaINT0015100 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14266807-14268838:+
Coord C1 exon
chr14:14266807-14266938
Coord A exon
chr14:14266939-14268717
Coord C2 exon
chr14:14268718-14268838
Length
1779 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TCTTTTTATCCTGCATGCAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GGTGCTGAAGTTTTGGCCTTTGTCTTTCTTGTGGAGCAAACTCTCAACCTGTGAGCAGCTGGGCCATCGCCTGCAGCACCTCCAGGTCATCAGCAGCAGCAAGAAGGCTCAAAACCAGACCCAGCTAATGAG
Seq A exon
GTATGGAGTGCACACACTGGCACATATGGCCCTGTCTCCTTTGGAGAACCCAAACCATGGATCCTGTGCCTGCCACAGGGCTCTGAGACTTCCCTGGCTGACAGAACAGTGCTGCAGGGTCCTCGCTGTGCCATGTCATGCTACCTTGCTTGCTCTCCCCCCTGGTACTTTGCAGGCATCTTCCCTGTGCACTCTTTTATCCTGCTTATGTCTTTTGCCAGGTGTATGCTTTTTCCCCTATGCTAGGAAGGACGGCTGGGATCTTACCCATAGAAAGCCTGTACTGCACCCTTGTGGATAGTGCCTTGCTGTCAGTACTTCCACAAGCTCATTGCTTGCACGTGTGCTGCCAAGGTTAACCAAAAGCTACCATCGGTATTCAGCAGCACTTTCCAAAAGAGCAGAAAGGTTTGGTTGCTGCCCTCTTTTGCCTGCTCCTTTCATGCAGTAACTGAAGATCAGAGGCTCCAAAAGCAGTGAGGATGTCAGTGTAACAGAAAAAGCAAACGTGGAGCACAGTGAGTGGAACAGGAGAGGTGGGGATCTGACACAGATACTGAATGCACTATGGCAGTTACACAGCGACTCTGGTTCTGTGTGGTTCTCTGATCCTGGACAAATAGACTTCCAGAGAACACTTTGATTAGCAGATTTGAAGGCCAGATGTAATTGCGGTTGTTTAACCTGAAGAACTCACATAATAGAATTCCCTTCAGACCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCACATAATAGAATTCCCTTCAGACCTGTCTTTAGATGAAAGGCAGTTCTGCAGCCCTGCTGGAGTTGCTTACATACCCAGGGATGCAACTGATTGCATTGACTGCTACTGAACTACACCTTTTGGAAAGCCATCTGATCTCCATGGGGATCCTCCAAGTGCTGGTGCCCTTGGGACTGTTGAATTCCCACTGAGTGTACATATACACCTTGTCCAACATTCCTTTTTGTAGCTTCCACCCTGCTATTCACTTCCCTTAAAGAGGTTTCATGGTGTGGCAGGCTCAGAGGGGCTTGGTGTTCAGCCACAGCAGTAGCAGCAGGTCAGTGGAAGTCGAAAGATGTCTCTACCATGTTTCTTTCCTAAGTTATCCTAGTGTCCCTGGGACAAGAAGGGCACTATTAGGTGCTGTCCTTCCTTTTGCTCTAACGTCGTTTCTTTTTATCCTGCATGCAG
Seq C2 exon
GAAAGCCAACATCTTTGTCTCTTTGCTGATTGATGTGGCTCTGGGGATACTGCTGATGTCCTGGCTGTACAGAAAGAACCAGATCGGTCACCTTGCTGACACTCTCATCCCCGTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF030879=DUF241=FE(39.6=100),PF0502410=Gpi1=PU(0.1=0.0)
A:
NA
C2:
PF030879=DUF241=PD(5.4=14.6),PF0502410=Gpi1=PU(21.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGAAGTTTTGGCCTTTG
R:
CCACGGGGATGAGAGTGTCAG
Band lengths:
248-2027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]