RnoINT0111134 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15296819-15297201:-
Coord C1 exon
chr10:15297070-15297201
Coord A exon
chr10:15296940-15297069
Coord C2 exon
chr10:15296819-15296939
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TTTCTCTGTTTTCCTTCCAGGAA
3' ss Score
13.77
Exon sequences
Seq C1 exon
GCTATGGAAGCTGGGGCCTCTTGCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCAGCACCGGCTGAAGCACCTCTCATTCATCTTCAGCACCGAGAAAGCCCAGAGTCCCATGCAGCTGATGAG
Seq A exon
GTGGGGTTTCCTTTACAAGGAAGGGTGGGGTGGCCCATCCTCTTTGCCTCTGCTCTGCCTTGTGCCTCCAGCCAGGCCTATCTCAGGTCACAGGCTGTGTCGAGCTGTGCTTTCTCTGTTTTCCTTCCAG
Seq C2 exon
GAAGGCCAACATGCTGGTTTCTGTGCTCCTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAACAACCGGATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(0.1=0.0)
A:
NA
C2:
PF0502410=Gpi1=PU(21.1=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAAGCTGGGGCCTCTT
R:
CACAGGGACCAGGGCATTG
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]