BtaINT0111571 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:506642-507121:+
Coord C1 exon
chr25:506642-506768
Coord A exon
chr25:506769-506967
Coord C2 exon
chr25:506968-507121
Length
199 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GGCTGACCCCGTCCCGCCAGGCT
3' ss Score
5.79
Exon sequences
Seq C1 exon
CGTGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGTTGATGGGTGCGCCCGCCGGGCTCAAAATGAACCGGGCGCTGGACCAGGTGCTGGGCCGCTTCTTCCTGTATCACATCCACCTGTGGATCA
Seq A exon
GTGAGTGCCGGCCAGCCCCGCGGTGCGTGCCCCGGGGACAGAGGCCCAGCTGAGGGGGAAGGGGGCCTCTTGGCCTCTGCTTCCTGTCGGCCCAGCACCCTGTGTGTGGAGCTGGGCCACACCTCAGGCAGCCGACCTCAGGGAGGACCAGGGGCTGCAGGACCCCGGGCACCCCTCAAGGCTGACCCCGTCCCGCCAG
Seq C2 exon
GCTACATCCACCTCATGTCCCCCTTCATCGAGCACATCCTGTGGCACTTGGGTCTGTCGGCCTGCCTGGGCCTAACGGTCGCCCTGTCCATCCTGTCGGACATCATCTCCCTTCTCACCTTCCACATCTACTGCTTCTACGTCTACGGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NA
C2:
PF0502410=Gpi1=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTGCAGTGGTTGATGG
R:
CGCCGTAGACGTAGAAGCAGT
Band lengths:
255-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]