MmuINT0119577 @ mm10
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25931674-25932231:-
Coord C1 exon
chr17:25932105-25932231
Coord A exon
chr17:25931828-25932104
Coord C2 exon
chr17:25931674-25931827
Length
277 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
GGCTGAACCCCATCCTGCAGGCT
3' ss Score
4.9
Exon sequences
Seq C1 exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCATCTGTGGATAA
Seq A exon
GTGAGTGCCTGCTGGGCAGGGTTGGGCAGCCCAGCAGGGCAGGTTGAGGAGAGCAGGCAACCCTAGTCAGGCCCCATTCTCCTCCTGCTTCCATTTGCTGGCCTCCTGTTTGTATGAAGCCAACTGTGTCAGGCCAGTTGAAGTCTCAAGCTGAAGTCTAGGTCCAGTGGCTGGGCTTGTGCTCACCCATATCCAGCAGTATTAGGTAGCCATTCTCAGAAGCATGGGCTCCCAGTGCCTTGGTGGGCACTACTTATGGCTGAACCCCATCCTGCAG
Seq C2 exon
GCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTTCCACATCTATTGCTTCTATGTCTACGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728:ENSMUST00000026823:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(22.1=100)
A:
NA
C2:
PF0502410=Gpi1=PU(38.5=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGGAGCTCCAGCATC
R:
CTGGCACCGTAGACATAGAAGC
Band lengths:
276-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types