GgaINT0015102 @ galGal4
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13510489-13511710:+
Coord C1 exon
chr14:13510489-13510615
Coord A exon
chr14:13510616-13511556
Coord C2 exon
chr14:13511557-13511710
Length
941 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
GACACTGCAATGTTCACTAGGCT
3' ss Score
4.61
Exon sequences
Seq C1 exon
CATGTAGCTGAAGAGCTGCAGGACCTGCTCCAGTGGCTGATGGGAGCACCAGCTGGACTGAAAATGAACCGAGCTTTGGATCAGGTGCTGGGTCGTTTCTTCCTTTACCACATCCATCTCTGGATTA
Seq A exon
GTAAGTGCAATTGTTTAACGTTTCAGCCTCCCTTTTCATCTCTTCCCTCCTAAGTGCTTAATGTTTGCCTAGAGGTGAATAATGAATCAAAATGCACTACTGCAAGTACAAACTTGTCTGTGAGTCTTCCTGCTGTGGGAACTCAAGCCAGAGCTGGATTCCCACACAAGGAAGTCATGCATATGAAATAAAGTGCTTGTCCTGATGTTTTGCAAGAAGTGCAAGTCACAGCGGACCTCACTTACTTGGTGCCATTAGCAGTGAGTGGCCAAGAGAAGGTTTTAAGTCTTACGCCAGCTCTGCCCTCTAAGTGGCATTTGATAGGAAGGAGAAGTGTGCTCTCTGGATGCAAACCCTGCCCTACCACTGACTCAGTACACAGTTTCTAGAGCTTTTCTGTATGTGTTCCTTCCTTGAAGTAACACACCCCAGTTACCCTTGACAAATGTCTTGATGAAGGAGGATAGTTATGATGGGAACCAACCCCTTAGATATTATGTTTACTTTGCGCCACATCTGTGATGAAAGGCACTGTGTGTGTCTCCAGACTTTTATTTTGCAGAATTCATTTGTCATGGCTTTTGTGGGAATAGGAAGAAAAGGGAGATGGCTTCAGTAATGCTTGACGTGTGTGGTTAAAAATATAATAGAGAACCGAATGCAAATCTAAAGAAGTAAATCCTGTATGGAGCAAGGTGACTGCTCTGTTGAAGCTGAGCATGTCCTCCCTGTCCTCACATAGCTGCTATTGGACGTAAACCCAGGGGGAAAGAGCTTTTGCTGGCCCTCCTAAGCAGAAGATGGCCATCCAAAGGAATTTTCCTGTGGTTTGGTGCAATTTTGAACAGAGGGGAGAAATGGGACAGAGAGAAAATGAGTCCTTTGAGAGTGTGAGCAGGGAAGATGTCTCAGTGAAATCCTGACACTGCAATGTTCACTAG
Seq C2 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(22.1=100)
A:
NA
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGCTGCAGGACCTG
R:
CGCTCCATAGACATAGAAGCAGT
Band lengths:
272-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]