RnoINT0111136 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15294306-15294860:-
Coord C1 exon
chr10:15294734-15294860
Coord A exon
chr10:15294460-15294733
Coord C2 exon
chr10:15294306-15294459
Length
274 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GGCCGAACCCCATCCTGCAGGCT
3' ss Score
4.46
Exon sequences
Seq C1 exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCACCTGTGGATCA
Seq A exon
GTGAGTGCCTGATGGGCAGGGTTGGGCAGCCAAGCGGGCTGGTTGAGGAGAGCAGGGGACCCTAGTCAGGGGCCCCATTTCCCCTGCTTCCATTTTCTGGCCTCCTGTTTGTATGGAGCCAGCTGTGTCAGGCCAGCTGCTCAAGCCAAAGTCGGGCCAGTGACTGGGCCTGTGCTGTGCTCACTTGTGTCCGGCAGTGTCAGGTATCCATTCCTGGAAGCGTGGGCTCCCAGTGCCTCACTGACACTACTTATGGCCGAACCCCATCCTGCAG
Seq C2 exon
GCTATATCCACCTAATGTCCCCCTTTATTGAGCACATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGACATCATCGCCCTTCTTACCTTCCACATCTACTGCTTCTATGTGTACGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(22.1=100)
A:
NA
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTGAGGAGCTCCAG
R:
GGCACCGTACACATAGAAGCA
Band lengths:
277-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]