BtaINT0111573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:507250-508007:+
Coord C1 exon
chr25:507250-507361
Coord A exon
chr25:507362-507926
Coord C2 exon
chr25:507927-508007
Length
565 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GGCATCCTTTCTCCTCGTAGCTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GCTCTACTGCCTGAAGATCCACGGCCTGTCCTCGCTGTGGCGCCTGTTCCGAGGGAAGAAGTGGAACGTCCTGCGCCAGCGCGTGGACTCCTGCTCCTACGACCTGGACCAG
Seq A exon
GTACCAGCTCCGTCCAGCCGGCCTTCGGCCTGCGCCGGCCCATGCAGTGGCCCGGGCATCACAAGGGGCAGCCTCGCTCCTGCTCCGCAGGCCCCAGGGGTTCAGGGAGCTGCAAGGGGCAGGGTGTATACGGGGCCATAACGGGGCAGAACTCGCCGCAGGCGGGGACAGACCCTGCTCCGGGAGGCTGCAGGACAGCAGGCGCTGGAGGTGAGTGCGCATGGGGCCTGGCTCGTCCTGTTAGCTTGTCCACACCCGCCACAGGGACCCTGAGTGCTGCCCTTCAGGGTGTTCTCTTCCTGCCTAATTTTTACCCCCCTCCTGTCTAGTGTATGGGCTGCACACCTCTCAGCTGGTCCTGTCTCTACCCACTCTCTGCCCTTGTGTCACCAGGTCTGGAGGGCAGGCATCCCTCCCAGGACTGGGGAGGGCTGTCCCAACTGGCATCAGGCAGCGGTGGGCGCTCCACCTCTGGACTGGCGGAGGGGCTATGGTCAGTGCAGGTGGGGGCGCCCCAGCGTGGGGCTCTTGCTGCTGCTGATGCTGGCATCCTTTCTCCTCGTAG
Seq C2 exon
CTGTTCATCGGGACCTTGCTCTTCACCATCCTGATTTTCCTGCTTCCTACCACGGCCCTGTACTACCTGGTGTTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(23.6=100)
A:
NA
C2:
PF0502410=Gpi1=PD(10.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCCTGAAGATCCACGG
R:
AACACCAGGTAGTACAGGGCC
Band lengths:
183-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]