GgaINT0015104 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14278660-14280555:+
Coord C1 exon
chr14:14278660-14278771
Coord A exon
chr14:14278772-14280474
Coord C2 exon
chr14:14280475-14280555
Length
1703 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TTGTTTCTTTTTCCCCCCAGTTA
3' ss Score
10.72
Exon sequences
Seq C1 exon
GCTCTACTGCCTGAAGATCTATGGCCTGTCGTCTCTCTGGCGCTTGTTCCGTGGGAAGAAGTGGAACGTCCTCCGGCAGCGGGTGGATTCCTGCTCTTATGACTTAGACCAG
Seq A exon
GTAGTGCTGCAGCACCAGGGCTTGCTGCAAGCAGGCAGTGTGATCCTGGCTGCTTTGGTTGCAGAGGCTGGGGGTTGGACTCGGTGATCCTTGGGGGTCCCTCCCAACTTGTGGCATCCTACAGCTGTGTGACCCCTGGGTTCTGCAGCACTCCATGCTTCCCTGTGTGCCCAGTGCAGTACTGGCAGGCGCCGGGTGCCCACCGTGCTCTGTGGGTGCTGCAGATGCTCTCAGCACAGAGTAGGCATGGGGGATGGAGGCAGTGCCCAGCAGTGTTGCCATAGGAACAGGCTTGCCAGTGCTGCTATGAAAAGGCCCCGCTTCATTCACGTTAAGCTGGAGCCTGGCGGCCCACACGTTCTCACTCAAACAGCAGAGGCAGGTTTTTTACTGTCAGATGCTGTAACCTCTTATGAAATCCTGCAACGCCATAGGAAGGCTGGGCAGAGCCCTGCTGCACCCACATCTCCTGTTGCAAGCATCACTGAAATCACAAAGTGATGTTCGGTGACCTCCAGGTGCCTCTCTGTGTTCAGCAGTCGAGCTCTGACTTCTCACACCACTGCAGCAGAGGGGTTTCTCTTTTCCTTGGTGATGGAAAAGTCAGAGCGTCTGTCAGGATGATGGTTTACGTCAGGCTCTGCCCTGCGTGCTCTGAGGAGGGTTGTTTGGCCCTCCAGGCTCTATCCTGCTGCTCACAGGAGTTGTGTTGCTGGCCTGGGTGGGATGAGACACTCAGAGCTGACCTTAAAAGTCTTCAGAAAACATTAAGGAACTGCAGTGGAGTGACAGAGGAGGGGAGAAACAGTGGCTGTGAAGGGGATGGGTCAGGCTGTGGTCTGTGTGTGGTTCCATGCATAAAGCTGAGCCATCGATCCACCTCTACAACGGGGCTGTTCCCTTTCATAACACACCGTGGCCGTGTTCTCTTCGTGCAGACATGGCAGTGCCCTCTGCTCCTGCGTCCTCTCAGTCACCAGAACAGAGAATTGAAGAGTTGGGTCTCTGTTAGTCATAAATCTGTATTTCTCCATTGGTTTCAGTTGAAATTAGTTTGGCTGGGCCAATCTGACATTAAAATAACCAGTTTGGTGGGCAGTGGAGCTAATGACACCTACTTTCCTATGGATTTCTCTTGTTTCACTCAAAATATTACATCATCCCACCCAGTCACTCTGTCTTCTTTGTCTCCCAGCTGCCTACTGAGCCAAGAGCCTTGATGTCCTGTGGCCGGCCAGTTGCTGCCCATTGGAAAGACTTTAACCCCACTCTCCCAAACCAAGGAGGAACAAAAATATCTCCCAAAGCCTATAGAATTCCCTACCAAGTTTCTACTTCTTTGCAACTTTCCACTTTTTTTTTCCCAGGAAAAAACAGACCAATGGATTTAAAACTCACGGGGGCAGGGGATGGTTAAACACTGTAATCATAAAAGCTTTACTTCCTAAGGAGGCCAGCCTAATTTAGGAAATCTTGAGCATTGTTCATAAAGGAACAAATGCTTTCATGATCTTTCCAAGCAGCCATATAAAAGGCCCCAAAAGAGAATAATTACTGAAAATATTAGATAGCAGAATTATTCACATAGGGAATTTAAAAGAAGATGCTAAGAGTCTTGCACACACTCTGTTTCACCATTTCCTAGTATTTTTATTGTGTTTTGCCATTGCTCTGCTGATGATTTTGTTTCTTTTTCCCCCCAG
Seq C2 exon
TTATTTATTGGCACGCTGCTATTTACCATCCTGCTGTTCCTTCTGCCTACAACTGCACTGTACTACTTGGTGTTTACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
NA
C2:
PF0502410=Gpi1=PD(8.9=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCCTGAAGATCTATGGCC
R:
CAGGGTAAACACCAAGTAGTACAGT
Band lengths:
190-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]