DreINT0114095 @ danRer10
Intron Retention
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26667653-26667926:-
Coord C1 exon
chr3:26667815-26667926
Coord A exon
chr3:26667734-26667814
Coord C2 exon
chr3:26667653-26667733
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCGATCTCTTTTCTTTGCAGTTG
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCTGTACTGTTTGAAGATCTACGGTCTCTCCTCGCTCTGGCGACTCTTTAGAGGAAAGAAATGGAACGTTTTGAGGCAGAGGGTGGACTCGTGCTCATACGACCTGGACCAG
Seq A exon
GTACGTCTCAGCATGATTTATTCATGTATTGGCCATTTAGTTCATTTCGCACAGAACTCGACCGATCTCTTTTCTTTGCAG
Seq C2 exon
TTGTTCATAGGGACTTTGCTCTTTACAATTCTGCTGTTCCTGCTGCCCACCACTGCCCTCTATTACCTGGTCTTTACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097:ENSDART00000143710:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
NA
C2:
PF0502410=Gpi1=PD(8.9=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACGGTCTCTCCTCGCTC
R:
ACCAGGTAATAGAGGGCAGTGG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]