MmuINT0119579 @ mm9
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26067903-26068518:-
Coord C1 exon
chr17:26068407-26068518
Coord A exon
chr17:26067984-26068406
Coord C2 exon
chr17:26067903-26067983
Length
423 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTGGTCCTTTTTCCCTGCAGCTC
3' ss Score
11.99
Exon sequences
Seq C1 exon
GCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTCTGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTGACCAG
Seq A exon
GTACCTACAGCTTTGAGCCTGCTGACCCTGCCAGGGCAGCTACTTAGACCCTACCAAGGACCAACCTACTCCTATCCTGCAGCTAGCTTCCAGCAGTTGGCCTAGGGGGAGGTACCTGCAGACCTACAGACTTTACCAAGGTGGGCATAGGACCTGCTTTGGCTTATTCCATTTGCTTACCCAGATGTGATACATGAAGTTTCCCCTAACATCATTTTTACCTATGTACCCTACTGCCTGTTTCCCCAGGTCCACAGGGTATGTAGACACACACTCCTCATGGTAAAGGGAACATGCTGACCCTTGCTAGCTCAGGAGACCAAAAAATTCAACTGCAGTTTAAGATGTGTGTGGGCAGTGATGGAGTTGCCTCCCTGGCCTGGATCTTGTGGTGCCAGGTGTGCTGGTCCTTTTTCCCTGCAG
Seq C2 exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-Pigq:NM_011822:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(19.5=100)
A:
NA
C2:
PF0502410=Gpi1=PD(10.8=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACTGCCTGAAGATCTATGG
R:
GGTGAATACCAGGTAGTACAGAGC
Band lengths:
190-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: