BtaINT0111664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35888995-35890333:+
Coord C1 exon
chr15:35888995-35889106
Coord A exon
chr15:35889107-35890253
Coord C2 exon
chr15:35890254-35890333
Length
1147 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTTTGTATGTGTTTATTTAGGCG
3' ss Score
7.43
Exon sequences
Seq C1 exon
TAATCATTGTCTTGGAAGCCATGAACATATTCAAAACTGTCGAAAATGGGACACAGAGATTAAACTGCAACTTTTGACCTTCAGCGCAATGTGTCAAAATCTGGCCCGAACA
Seq A exon
GTAAGTGTATACCCTATACTGAATTGCGTTTGGTTGAATCTGAATAACATTGTTAATCAGCCAGTTTGCAGTTTATACCTTCTTTAAGAGATTTGGGTTTGACTGTGAGTGAGGAACTGTGAGTGATGGGGGGAAACTTTCAATCATGGAGGTTTAGGTAGCATAATACTCAGAGCTGGAAGCATGTGTGAAAATCAAAGTTTTATAAGAGTTTGACTTGTAATAGTTTTACCCAAGTTGCACAATGAAAACATCAGCATCAGTCAAGGAGAACTGAGGAAAAAAGATTTTGAATGCTAAATATGGATTGGGGGAGAAAAAGATACATATTGACATTTGCACCAAACTGAGGAAAATATATTATTTTTCACCACATGAAAACTAATTCTCTGTTCTAAAAGTATAGTACTTTATTTTGAGGTTAAAGCAAAATAGAATATAAGAATTTAGGCCATTTTATTTCTTGATGAATTTTAATATGTAAGGAGAGATAATCTTTCTTCATTTGGTAGAATTTGGGGAAGAAAAATATCTGTCATTTCTGCTTTCTCTTTTCTTTATTTTCCTCAGTTTTGCTCCTATGTTAAGTAGAGTTTATTTCACTTGGGTGAAAACTGTTTCACAAAATTCAGTACATTTTATCATATCATTAGTAACTTTTCTTTTCAGTTTCCTAAGGAGTGATGTTCTTGAGTACTTTGCATAGTAAGGGTTATCGTTGAAAAGACCAGAACCTCACTTATTGAGGGTGAGGTAGAAGGAAATTTGATTATCATTAGAAAATATAATGCAGAAATTTAGATGATCTCTTGTCATCTGGTTCCCACCTCACCTTCATTTGGCTGTCAGCCATCTTTAAAAGTGTTTTTAACTCTTCATTCTCTCTCAATAGAACAGAAGTGGTTTTCCTTTGAAAAAATTTACATATCAGAAAATAGACTTCAAAGTATTTATGTTTTTTCCACTTAAAAAACAGGTTTTTTAGAAGACAGTCACTTTTCTGAGTCAATTATAAATATTTAAAGCCTCAGTTCTGAAAAATCACTTTCTTTTCAAGAGTTTATCATATGCTTAACCCTGTTTAACTTGGCAGCAGAAAGACTAATGGATTTCATTATTTGATAAATGTTTGTATGTGTTTATTTAG
Seq C2 exon
GCGGAAGATGATGAAACACCTGTGGATTTAAACAAACACCTGCATCAAATAGAAAAACCTTATAAAGAAGTCATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901:ENSBTAT00000046627:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.370
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTGTCTTGGAAGCCATGA
R:
CTCGTCATGACTTCTTTATAAGGTTT
Band lengths:
190-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development