GgaINT1021598 @ galGal4
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr5:11164996-11165715:-
Coord C1 exon
chr5:11165604-11165715
Coord A exon
chr5:11165076-11165603
Coord C2 exon
chr5:11164996-11165075
Length
528 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TATATAATATTTTACTACAGGAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
TAAGCACTGCGTAGGAAGCCATGAATATATTCAGAACTGTCGGAAATGGGATACAGAAATTAAACTGCAGCTTGTGACCCATACTGAAATTTGCCGAGGTCTGGCGCGAACA
Seq A exon
GTAAGTATCTCCTGAACTGCAGTAGCAATTCAAGCTTAAAGAGTTTGAGAGTTTGCATCAGAGGTGATGGATCTGAGGTGAAATCTTCTTTTGTCATTAACAAATCAGTAAATCTGTATGATGTTGGGAATTGTGTTCTCTACTAAGAGCATGTGAAACATGGATAATGTATCTTAACACCAATTACCGCAGCTGGAAAAAGTTATTTATCTAAACTTAAGGCCTTAAAGAGAAGCAGCAGATTTCAGAGTTAAATATAAGCTGCGGACAGTTTTTGAGTTTAATTGGGTATATATCTGATGATTGAAGAGAATGGGAGGGAGGAACAGAGTTGGACACTCAGTAGCTGTTTCTCCACTTTTCCACTGTCTCAATGTGAGTTTTTTGGAGGCTATCAGTTATTTCTTTTCACTTTCAAAGATATCTTTCCACTTTTATTCCTCAGGTATTAGCAGTGAGAGGTCTAAAACTTTATCATAAATCATAGAAAGTTGGAAACTGTACTCAATATATAATATTTTACTACAG
Seq C2 exon
GAAGAAGATGACAGTACACCCATAGACCTAACCAAACACCTCTACAAAGTAGAAAAGCCTTTCAGAGAACCTAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(27.9=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCACTGCGTAGGAAGCCA
R:
TATGTTAGGTTCTCTGAAAGGCTT
Band lengths:
190-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]