BtaINT0111691 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2024840-2025287:-
Coord C1 exon
chr16:2025133-2025287
Coord A exon
chr16:2024961-2025132
Coord C2 exon
chr16:2024840-2024960
Length
172 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CCCCGCCTCACCCCTTTCAGGCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
CCTCCGATCCGGCTCTGATGTCCAGGACTACGCCCTCACTGGGTATGTCTGGAGCGCTGTCACCCCGAGCCCGGAGCACCTCGGGGACGAGGTGAACCTGAAGGTGACCGTGCTGTGCGACAGCCTGCGGGAGCCGCTCACTTTTACCTGCAACT
Seq A exon
GTAAGTTGGGGGGAGGCTGCGTGGGCATCCTCAGAGGTGGGGCAGGGGTGACTGTTTTGAAACCCCAAACTGCTTCATTGGCTGGTGCTGGGCCTGCAGGGCGAGGGGGCTCAGGTTGAGCCCCGCCTGCCGCAGTGACCCCCTCCTTGCCCCCCCGCCTCACCCCTTTCAG
Seq C2 exon
GCTCCTCCACTGTAGACTTGCTCATCTACCAGACCCTGTGCTACACCCGTGATGAACTGAGGGATGTCGACGTGGGTGACTTTGTGCTGAAGCCCTGTGGGCTGGAGGAGTTCCTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.0=62.3)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGGCTCTGATGTCCAGG
R:
GCTTCAGCACAAAGTCACCCA
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development