RnoINT0111287 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49874063-49874616:+
Coord C1 exon
chr13:49874063-49874217
Coord A exon
chr13:49874218-49874495
Coord C2 exon
chr13:49874496-49874616
Length
278 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTTTGCCTTGCCCCTTCCAGGTT
3' ss Score
11.55
Exon sequences
Seq C1 exon
CCTGCGCACGGGCTCTGATACCCAGGACTATTCCCTAACTGGGTGTGTCTGGAGCACTGTCACCCCGAGCCCAGAGCACCTTGGGGATGAGGTCAACCTGAAGGTGACTGTGTTGTGTGACAGTCTTCGGGAGCCACTCACCTTTACCTGCAACT
Seq A exon
GTGAGTTGGTCTGGTTTACATGAGTGTCCCCAGAGCTAAGGCAGGAGGATTGTTTGGGACTGGAGGGCTTTGTTTCTCACCTCACTCTGTAGCTTGAATGAGGACATTTCCGAAGGGCCAGCTTTCCTGGCACATAGTTACTTCGCGTGTTCGTCTGCTTTCTCTGACTGCCGGTGGGTGCTAGAGACCACTTAGCTGGTGATAAGAGATAGAGGCTGGGAGGGTCTGTCCCAGCTGCCCCGTGTCACTGCCTTGCTCTTTTGCCTTGCCCCTTCCAG
Seq C2 exon
GTTCCTCCACCGTGGACTTGCTCATTTACCAGACCCTCTGCTACACCCACGACGAGCTGAGGGAGGTGGATGTGGGCGACTTTGTGCTCAAGCCCTGTGGGCTGGAGGAATTCCTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.0=62.3)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCACGGGCTCTGATA
R:
GGAATTCCTCCAGCCCACAG
Band lengths:
268-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]