GgaINT1021604 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1745199-1745590:-
Coord C1 exon
chr26:1745436-1745590
Coord A exon
chr26:1745320-1745435
Coord C2 exon
chr26:1745199-1745319
Length
116 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTGCTCCCTGTCCCCATAGGCT
3' ss Score
12.93
Exon sequences
Seq C1 exon
GCTGCGGTCCAGCTCCAGCCCCCAGGACTATTCCCTGACTGGCTTCGTGTGGAGCGCCGTCAACCTCAGCCCCGAGCACCTGGGACATGGCATCAGCCTGAAGGTGACAGTGCTGTGTGACAGCCTGCGGGAGCCCCTCACCTTCACCTGCGACT
Seq A exon
GTAAGTGGGCTGCAAAGTGGGGACAGCCCCCCAGCAATGCCAAGGGGGGGAGTTAGGGAGGTTGCGTGGGGCAGTGCCAGCCTGGGGGTGCTCACCTCTGCTCCCTGTCCCCATAG
Seq C2 exon
GCTCCTCCACTGTGGATCTGCTCATCTACCAGACCCTGTGCTACACGCACGACGAGCTGCACACCGTTGATGTTGAGGATTTTGTGCTCAAGCTGTGTGGCTTGGAGGAATTCTTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.0=62.3)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGGACTATTCCCTGAC
R:
AATTCCTCCAAGCCACACAGC
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]