BtaINT0111700 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2014750-2015784:-
Coord C1 exon
chr16:2015751-2015784
Coord A exon
chr16:2014946-2015750
Coord C2 exon
chr16:2014750-2014945
Length
805 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCGACCCCTTCCTTAAACAGAGA
3' ss Score
8.11
Exon sequences
Seq C1 exon
GATCCCACCGTCTTGGCCATGAAGGAAAACCGAG
Seq A exon
GTAAGGGACTGCTCTTCATGCGGGAGTGGGCAGGTGAAAACCTCAGGTTCTGCCCAGATTCCTTTTCTCCCCAGCTCCCTTGATTTATGGGTCCAGGTCTGCCTGTGTGTGTGTGTTTTCCTATATGAGGCATGGACACAGCTGGAGAGCATATTTCTTTCCACAAAATGTTTTTGCATTATTTTTCCTATTTATTCCTATGGTGTCCCTGGGAGATGGAGATGAGTTTGTGTAAGTGTGGGAGTGGGCATGGTGCCCCGGCTTCCAAATGGGAAAACTTTCACTTGAGTAGGTTGTAGGCTCATAACCCCCGTGTTTCCAATTCAGCAGGGCCTGGGGAGACAGTGATAAAGAATTTTTCCCTAGGATCCCCTCTTAAGTCTTTCCAGCAGAATGTTGCCCATATCCTAGAAATATGTTGCTCATATCTCCAGGATTCTTGGTCAGTGATTCCCAATCTTTCAGATTTTGTGGACCAAAAAGTATTATTTTGGTGACCGACATACAATTGTTGGTCTTATTTTGCTAAGCAGTGACTTCCTAGTAACTGGTAACTCTTATTCCTACTATTTCCTAAAAGAAAGGACATTTAACACAAAATAAGTAGCAGCACATATAAATCAGGACGATGTTTAGAACTGAGCATCTTTCATTTTATGAGCAGTATGTGCTGTGCCCCTGCTTTCCCCATTTCAGCACAGACGCGTGACTGGCGCTCAGGGCCGCGGTCCCAGGCAGTGCCTTGCCCACAGAATGGAGCTCACTGACCCTCAGAGCTCTTCCTCCCGACCCCTTCCTTAAACAG
Seq C2 exon
AGAAGGTTGTGGAAGCCCTGACGGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACGTTCAACGCAGACTTCCAGCCCGCGGTGCCTGGGAGCCGCAAGCACACCCTGGTTCAGGAGGCCTGCCATCTCTCGGGGCCGCTGGCCTTCACGGTCTATGCCACCCACCGCATCCCGATCACCTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTTGGCCATGAAGGAAA
R:
TGGTAGCCCAGGTGATCGG
Band lengths:
222-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development