GgaINT1021611 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1740963-1741525:-
Coord C1 exon
chr26:1741492-1741525
Coord A exon
chr26:1741159-1741491
Coord C2 exon
chr26:1740963-1741158
Length
333 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
CTCTCCTTTCTCCCCTGCAGAGA
3' ss Score
12.5
Exon sequences
Seq C1 exon
GATCCAAATGTTCTGGCCAAGAGGGAAAATCGAG
Seq A exon
GTATTGCAGTTCTCCTCCTCCCCTTCTGGGCTGAAGTTCTCGGTGCTTTTAATCTTCAAACCCCTCCTCCTCCTCAATTATTAAGGCCGAAAATGGGGTTGAAACCCTTCTTAAGGAAAGAGTTCTTCAGGAGGCTGTGCCTATTGTTCCTCCCCGTCAGCTCAGCAAAGTGGGAGTCTGCAATTCCTGCAGTTCCTCCTCACGCCCCACAGCAGAGCCCTGCCCGGGGTCCCCTCCAGTATCCCAGCCCCATGTTAGGGCCACCCTATGGGACACAGCAGGGCTGCAGGTCTGGGGCAGCTCCACGTCACCCCTCTCCTTTCTCCCCTGCAG
Seq C2 exon
AGAGGATCGTGGAGAGCCTGACGGCCGCCATCCTGGACCTGGTGGGGCTGTACTGCAGCACCTTCAATGCTGACTTCCAGACAGCTGTGCAATGGAGCCGGGAGCACGGCGTGGTGCAGGAGGCTCGCCTGCTCTCCTGCCCACTCTCCTTCACCGTTTACGCCACACACCGCATCCCCATCACCTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAAATGTTCTGGCCAAGA
R:
CCAGGTGATGGGGATGCGG
Band lengths:
222-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]