DreINT0114217 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23416161-23419197:-
Coord C1 exon
chr11:23419164-23419197
Coord A exon
chr11:23416357-23419163
Coord C2 exon
chr11:23416161-23416356
Length
2807 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
GTTTTTCTCTATATTTATAGTGG
3' ss Score
5.93
Exon sequences
Seq C1 exon
GATGTCAGTGTCTTGGCCAAGAAAGAAAACAGAG
Seq A exon
GTATGAAGATTCACTCTGGTTATAATGCTTTCACATACAACCAATGCTATTAGCAGTACTTATGATATTTGAAAATAGTAAAGCCATCAAAAAATTTACTGAAATGGAAGCATGAGATTAAGGTGATCACCAAAAATACTGAATAACTAATAAACACACAAACCAAATGAGTATGGAGTATGAGTGTTTCTACCAGGGAATAAAATCTAAAACAATCTTAATGTAATTGTGACTTTTTAATTTTGATTATATTCATCAATTTTAAGTTGATATCCTTGTATAAAGAAAATGGTGAGCTATAATTTGAGATCTAAACAATATAAATATAAGATATAAATTATGAGATCTAAACAAATGTAAAAAAGCAGAACTGAGAGATGGAAACTTAAGATAGTTTCCAATTCTGAAATTACATTTGTTCTTTTTTGCTTTTCTTTTTTCGATTCATTTTTTTTGTAAATTTTTTTACAATTGCATGTTTATAAATGTTAAAAATGTGATTTATAAAGTTCCAAAATTAAGTCAGAATTTTGAAATCAATTTTCTTTTAAGTTTTTTAAATCAATTTTACATATATATATGTAATATAGTAGTTATATGTTTGTTTGGTTAAAATAATATAAATAATGTTGTGCTTTATCATTTATATAACTACTTTACAGTTGCTTTTTATAATAAAATTAGTTTTAATTAAATTAAATTAGCTTTAATTAAATTAGTTTAATCCTAGTCAAATTCATATTTAATTTAGCAGACATTTTCATCCAAAGTGACTTACAAATGAGCAATCACACAAGTAGCAGTAGTGGGAGGCAAGCCTTGACATGAGGCCGATTGTCCCACCAGTGACGATATACAGCCATAATTCTCTGCGTTTTTACTACAGTTCGACAGCATAATCGTGCATATAAAAAAGAAAATCAAACTAGTAGAGTCTCAAAAGCTATTTTGTAAGAGGAACTACTTTCTTCAGCCATTAATTCACATCTGCAGCTGATGCAGCAGAAACCAATGCTACTTCACAAATGTCACTTTAGAGCTAGTATTTGAATGATTCTCTTGCGTAATGTCTAAAGTGATGACAAAAGAGGTGATTTTGCTGACATTCTTAGATTATAAGGCTGAACGGCATGAAATGCCATCAGTCTACAGAGACTTCCCAGTATTTCTGTTGCAGTCGGGAGATCACTATAATTATCCCACCAAAAAAAGCCAAAGCAGCAACAACACTACAAGATTATTGTTATGTTTGCCGTAATAAAAAACACTAAACACATGTGGGCATTTTTCTTTTTACTGAACTAGTTTGCAGTAACAAAAACTGAAAAAGAGTTGTACAAAGAGTGGCCAACACAAAATACACACGTTCCTAAAATGCGAGTTCCATCTCACACTCAAAACACTAATGTGCAATTATACAATATAAATAACGCACTACAACATACAAAAGAGAGAGATCGACTCAGTCAATAACCTCTTTAATAGTAGTTAAAAATTACGCTGTTTTTCTCTTCTAAGGGCTTATGCGGCCTCTGTCGCCATCTATTGGATAAACAACGTTAACCATCTTTGCTCCATGACAGGCTAAAATGACCACCAACGTGCTGTCTCTCAGATATTATAAATATTTAAAAATAGGCACTATCCTTGTAAATAAACTGCATAGTTGCAATCTAAACAACTCGACTAAAGCCTCAAAAGTTCATTATGTTGTCAACAGCTTCAATATTTGTCAAACTGTAGAGGGTCCTCTGCTTATTGCTGTATGTGGACGGAGTAATACACAAGGGTGAAGGGGCGACACGAGTGCTGTTATTTGCAGATTATCGCATGACTATCCGCCAATCAGATTCAAGAACCAGACAGAACTGTATAAATAACGATAAACAATCTTCAAATCACCATAACAGCATCAATATGTAGATTTTGTTGAAAACCAGATAGATCAGTGGTTACAAACTCCACAGCCCTGCATAGTTACGCTCCAACCACTTTCAATTCACACCTGTTTAAATACTCTAGTAGTCTTAAACTGTGGTCACTCTGGAGTTTGAGCATGCGAAATTCTGTCGTGTGCCGCTGCGAAAAGGGGCGGGATTAAACCAGATCATTGTACATTTAAAAAAAAAGCGAGCGATTGGTCCATGTTTTAAATTTCTGTCCAGAGAGGTCATGCTTTGATCCTGGATTGGTCTCGTGCAGTCAAGTGATGTGATTTCACAGGTCAGAGTTCACCAAGCTTGTACTTTGCAAAAACAAAACTGTGCAGAGCTGCTGCCCTCTAGGAATTAAGTTTGAGACCTATGAGATAGATAAATAATAAATAGGGAGTACTATTGTTTGGAGGATTGAGTGTTAACAAAATGGATGCATCTTTAGCTTAGTGTTAAGCAAGTCCATTTTTATCTTAATACACATTTATGTAATCACAGATCTAAGATCAGTTCAAACTTGACTGGCCTCTTCCTGTTGAGGACATATGCAAGTGTGTGGTGTTTGTTGGAGGATTGTGTTTATGTTGCATCCTGCAGCGAGGAAGCCTGTGATCTCAGATATGAGTAAACAGGAAGGATGAGGCCCATGTGTGAGGCAGGAGATAATATTAATGTCCCCCTTTTTAACTGTAACATTAGAAGGTGACATCCTACTAGGGCTAAATCCAGCTTTCAATGAGCAAAAAAGCACAAGATTTGAGAAGTAGAGTAAAGGGTTAATCAGAGTAAAGCATCTCAAAAAGTAGTGTAGATATTGATGATATTCAATATCAGAATTTGTGCGCAACTTATTGTTTTTCTCTATATTTATAG
Seq C2 exon
TGGCAATTGTCGAGAAGTTGACTGCAGCCATTTTGGATCTTGTGGAGCTGTACTGTAGTACCTTCAACGCTAATTTCCACACCATGCCACACAGCAGCAGATCCACAGCCCCAATTCAGGAAGCTGGCATGGTCACCAATGTGCTTTCCTTCAGTGTTTACGCCGCTCATCGGGTCCCCATCACGTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]