BtaINT0111728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92194303-92200151:-
Coord C1 exon
chr5:92200029-92200151
Coord A exon
chr5:92194337-92200028
Coord C2 exon
chr5:92194303-92194336
Length
5692 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GACCTATTTTTCTTTTTCAGAAT
3' ss Score
11.85
Exon sequences
Seq C1 exon
CAAAATGTGGACAATGTTATTGAAGAAGTAAAAAGTATATGCAGTGTTCTGGGATGTGTGGAGACCAAACAAATTACAGATGCTATAAATGAACTAAATCTTATTCTTCAGAGAAAACCAAAG
Seq A exon
GTAAATACACTCATTTATTACACAGCAATTATTTTAAACCTGAGTTCAATAATTAATTAAGGAGAGTGAAAGACTTTTGATGAACTGGTATAAATGTATGTGTGTGTGTATGTGTGTGCATGTGTTGCTGTTCATATATATTTCAATCATTTGGGGATAATGAAAACTTAATTCTATTATACCAAAATAATTGAATTAAAAGGAAATTTCTTATACCTTTGAAGTGTAACTACAATACAACCTTCAAGTGAGACTGAAATCTATCCTACAGTCCTACCTAGATGAATGTGCTTATATAATAATATTCACAGGCAAGTGTTTGTATAGACTATTAATGGTTCTCATGCACACCAGTGTATGCAGAGGTAGGTACCCATGCTTGCTTGGACAAGCATTTATGCAGGAAAGAATAGATCAGTTTTTGTGGTATTTTTTGTTGAATCTTCAAGGCACACTGCTTTGATGATCCCACATTCTATAATGATTTCCTGGGTTTTCCATTTATAAAAATGAACATTATATGAGCATTATATGATTTTTTCTTTTAAATCTCAGAAATCTGATGTAGATTATATGTGAATATTGCCTAAGAAAAAGATTAGGACATCTGGTTACAATGAATTGTTCAATCTTGGTGCTAGTTTAGCAAGTGATAAAGTCAAAAGATAGGATACTGTTGATGATAATAACTAATACTTGATCAGATCAGATCAGTCACTCAGTCGTGTCTGACTCTTTGCGACCCCATGAATCGCAGCATGCCAGGCCTCCCTGTCCATAACCAACTCCTGGAGTTCACCCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCATGCCCCCAATCCCTCACAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTTGCATAAGGTGGCCAAAGGACTGAAATTTCAGCTTTAGCATCATTCCTTCCAAATAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGCTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCACTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCACAACTTTCCTTCCAAGGAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTTTCCCCATTAATAAGCAGCAAAATAGAAATTTGAGCCCAGGCCTCTAAACACACTTCAGTACATATGAAACTTCATAAAAGAGAGTGACTGCATGCATTTTTTATCTATATGGATAGGAAGAGCACAGATTCTATTACCTTGAATGCACCAGTCTTGAAATTTCAAAAAGACTGATTTACAAAGTTGACAATTATACTAATATATATAAATTGTCATTGTTTCAAATAGGTGACTAGTAAAAATCAGTAATTTCTTACTATCAGACTTCCTATGTCTTTTTTTTCCTCAAGTGCAACTGCTTTACAATGTTGTGTTAGATTCTGCTGTACAACGAAGTGAATCAGCTATATGTATACATAAATCTCCTCCCTCTTGAGTCTCCCTCCTACTCTCCCATCTCACGCTTTTAAGTCATCACAGAGCACCAAGCTGAGCTCCCTATGATATACAGCAGCCTCCCACTAGCTATCTATTTACACATGGTAGTGTATATATGTCCATGCTACTCTCAATTCATCTCCTCCTCTCCTTCACAATCATCCACCCCTGCCCCAATCAACAAGTCCATTCTCTACATTTATGTCTCTATTCCTGCCCTGCAAATAGGTTAATCATTACCATTTTTCTTGATTCCACGTGCTTAGTCGCTCAGTCATGTCCGACTCTTTGCAACCCCATGGACTGTAGCCCAGCAGGCTCTTCTGTCCATTGCAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCATACTGGAATAGGTTTCCATGCCATACTGGAGCAGGTTGCCATGCCTTCTTCCAGGAGATCCTCCCAACTCAGGGATGAAATCCAGGTCTCCCATATTGCAGGAGGATTCTTTACCATCTGAGAAACCAGGGAAGCCCAAGAACACTGGAGTAGGTAGCCAATCCCTTCTCCGGGGGATCTTCCCATCCCAGGAATCAAACTGGGATCTCCTGAATAGCAGGTGTATTCTTTACCAGCTGAGCTACCAGGGAAGCCTGCTAGATTTCATACATACGTGTTAATATATGGTATTTGTTTTTCTCCCTATATCTTATTATAAACAATTACAATTGTATTTTTTGCAATTAGATGTAATAAATTCAGAATTTTTAATATCCTATTTGCATTACATGAACAGTGACAGTGGTGACTGAGGAGCAAAGGTCTCATATCAACAAAAGATTTTATAACAGCTGAAGTTAAGATAACAAGTGAGAATTAACTTGCAACAAGTTATTCATTTCTCTTAGATTACCACATTTTGGAGATAATACAAATACCTAGAGCTGATAATAAAATACAAAAAGCATAGGGTCATGCAGAGATGATTTGAATTTGAGATCTGCCACTTGCCAGGTGAATATACTTTGGAAAACTAATTAACTTCTCTAAGTTTCAGTTTTCCTCCTCTCTAAAACAGAAAAAGAAAACAGAATTTGCAGGGTTCTTGAATCAGAAATAACATTAACAAATGGGCCAGATGAGAGTATATTTTGAGTGGCTCAGAGGTAAAGAATCTGTCTGCAATGCAGGAGACCACCTACAATGCTGGAAATGAAGGTTCAGTCCCTGGGCCGGGAAGATCCCCTGGAGAAAGTAATTGCAAACCACTCCAGCATTCTTGCCTAGGAAAACTGATGGACAGAGGAGTGTGGTAGGCTACAGTCCATGAAGTCACAGTCAGACACAACCTAGCAAGTAAACCACTACCACCCATTATTATTAGTGGAAGTAGTAGAGATGATGCTGTAGTAGTTTTTTATAATCTTCCTCATGAGGCCAAGAAGAGTTTAATTCACCCAAGTACCACTAAATACTCTCTTATCTCTGGGCCATTGGTTATAGCCAACCTCAGGATAAATGCTAGAGTAGGAAACCAGATACATGAATGTGGACACATGTCTTCCCATCTGTTAAGACCACTTGGCTGTTCTTTAGTTTTTATGTCCTGCTCTCAGTAAATCAGTAGAAACAAACAAATGATCAAAGAAGGAGGAAAATCTAATTTTAGGATGAAGCATTTCAAATGCTGTTAAAGTAGCACTTTAACAACAACAACAAAAAGCTTTTTAAAGAAAAAGCTTTCTTTAAACATTCATTTTCTGAAACTCCCTAGATAAACAAAAATGACAGTTTTCTCAAAAATATCAAATTTTCAACATATCTGAAGCAAAAGAATCCTTCAAGGAGAAACAAAGTATTTCCTAGGAAAATATGGACAATTACAATAATCGAGAGAAGCTCATATCATATTTCACATTTCTTCTATACTTAAGAGCACTAAATTGTATGTGACTATTCATGCATAGAAATGAAGAAAAGAATTGACATTTACCAGTTTTATTTCATATATGTCAAGGGTCAAAATAAATAGTTGAATATCCCCAAGTAAACAGATTCTGCTTGAGTACCTTTTCAAAGTTTATTCAACATTATTCACACATTTTGTCCATCCCTTTTCTCAACATATCTTAACTATAAGCCCACCTATATAAGAAAATCAGCACAAATAGTAAGTATATTTTACATTATTTCTGTAGTAACCAACTATGGCTAATAATGCCAAACTATTTCAATCTATCCACCCACCATAAACCTAAAACTAAAGAAACACTGAGAAATATGTCTTCTGCCAACAGATTCAAATTTCAGAAGCTGTCCTTTTTCTTGGCTGCATTTTTAGGTCAACTAACAAAACACTATTTCCTGCCATACCAGGAAGTAATTAAGTATTTACTAAATGTAAGTTTTGGCAAAATGAAGAACTATATCACAAATGCAGTTGTACTCCATCTATACTTCACGCTCCCACCTAGCACTGGAAACAATTTTCCATTCTTTAGAACTGTATTCCAGAAGCTCACATATTTCCATTAAATACACAATAAACGAACTACAAATAAAAAATACAGTCTTAAAAAAAAATACAGTCTTACACATTGTGCTGTAGGTGGGTGTCATGGTGATTTAAAAATACAAGTTTACATTTCTGAATAAACTGAATTCTAGTTAAGTCACGCTAATGTGTTTAACAATCTCACCCACACAGCTGGGGTAAAGATCTCATGTGTTCAGCTTAGTAGTTGAATCTATGCTCTAATAGGTGAACTATTTTACCTAAGAGAATTGCTTCTGAGAAGGTTCATGTGAATGATACTCTTCAATGAAAAGTTACATACACGTTTAATTACATTCTAAACATGACAGACGGCTTTTCTCTCTAAAAGGAATACTCTAGCAAGTTCCTTGTTACAGGAAAACAATTATTCCCTAGTTTGTTTGTTTGAAAAATCAAGCTTTTCATTAATTGGATTTCCTTCAAAGCAAACTTGTCAAAGCAAAATTTCCAAAAAAATTTAGCGTCAATTAAAATGGATCTTGTTAGAAAACTGAATTTTCTTTTTGACTGAAATGTAACTTTTAATGAATCTGTGAATCACCTACCTTATATAGTTTTCATGATAATGAAGTTATAGCCAGTAAATTCTAAACCACTAAAGTAACTCCAGGTGTACAATAAACATAAACAAACAAGCAAATAAAAACCCCCATGCTAATGGATACAAACTTAAATGATAATAAAAAACACAAAATTTCAGATAGTTTTTTTTTTTTTTTAATCCAGGATACAATCTCAAGTATTTGACTACCAGTTTCTCTTTTTAATCCTACAAAATAAAGAAATGAAACTATACAGTGAATCTGTATGATTTTTTAAGCCTGTATATAAATGACTGTTAAAATAAGAACTGAACACACTAAACAGCGAAAATGACAAATCTTTTATACTAAAATATCAGTCCCTGTTGTGGAAGGGGGATTGAATTTAGGCACTATCTGTGGGTGTGTACTGAGTCTCTTTAGTCGTGTCCAATTCTTTGCTACCCTATGGACTACAGCCCTGTCAGGCTCCTTTGTCCATGGGATTCTCCAGGAAAGAAACTGGAGTGGGTTGCCATACTCTCCTGCAGGGGATCTTTCCCACCCAGGGATCAAACCTGGGTCTCATGCATTGCAGGCAGACTTTTTTACTGTCTGAGCCACCAGGGAAGCTATTTTGCCACCAGGCAATATCTGCAGAACTGTTCAAATAATACTAAGAAGGCTGAGCTTATGCTAGAAATTATTTTTTTTAATCAAATAATAAAGATCGATGATTATGACAGTTAGAAGACTCTTCTTTCATCTTACAATTTAGATTTCCTGTTTAATAAGTAATATTTATATAAGGCACCAAGAAATGCATTTTCTTTTTATCATAGCAGAGAAATTCCTATATGTAGATTGTGGACATTATTGGTTTGGTTTTCCAAATTTGTTTTCTGAATAACAATTGTATCTTTCGACCTATTTTTCTTTTTCAG
Seq C2 exon
AATCTTCATCAAAATTCAGACACTTCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715:ENSBTAT00000043102:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]