BtaINT0112618 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99237520-99240314:+
Coord C1 exon
chr11:99237520-99237703
Coord A exon
chr11:99237704-99240167
Coord C2 exon
chr11:99240168-99240314
Length
2464 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTCACTACGCTCCCCGACAGGGA
3' ss Score
6.34
Exon sequences
Seq C1 exon
GCTCAGGCCCAGCTCCAGGAGTCCTGCCAGAAACTGGACCTCCTGCGGCTGGCCTTGGAGCAGCTGCTGGAGAGACTGCCTCCTGCCCACCCTCTGCGCGGCAGAGTGGCCCGGGAGCTGCGGACTGCTGCGTCTGGGAACCCACAGCCTTCAGGGACGCTCGTGAAGCCCACCGCCATGACAG
Seq A exon
GTACCTGGGAGCCCATCCTACTTCAAAGCTCTCCTTCCCTTCCAGGGAGGAGCCTGGAACTCAGTGGGGAAGAATTTTGGAGAAGATTTCTAATCCCGGCTTCACCATCCCTTAGCTGTGTGCCCTTGGGCGACTGACACCCCCTCTCCAGACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAATTTTCACACCAACCCTATGAAGTAGGTGATGTTATCACCCCCATTTGACAGAGTGATAAACTGAGGTCTGGAGAAGGGGTGTCAGTTGCCCAAGGTCACACAGCTAAGGGATGGTGAAGCCAGGATTGAAAATCTTCTCCAAAATTCTTCCCCAGTGTGTTTCAATGAGGAACCATGAGAGTGTTAGGCTGGATTTGACAGTGTTAGGGAGCTCACAGCCCTGGAGACCTTGGTACCCAGTTCTGGGCAGTTTTCACTATTAGAAAGTTCTTCCTTATCCCAAGTGGATCTGACACGATGGAAGCCCTGAGCTTCCCACCTGGGACCCAGTGCCAACTAGAGGGCCCAGCCCCTGCCTGCACAGAGCTGGTACAGAATAGATAGGCCTTGTTCCATTGTGAGCAGAGCTGAAGGGGAAAAGTACAGGGACTGCACGGGCCCCCTCATCTGGCCTTGGGGAACCAAGGAATGCTTCCTGGAGGGGGAGGCATGTCCTTGAAGGGCTTATGGGAGTTGACCAAGTCGACAAGCTGGGAAAGGTGAGGGCAAGGTCTTATTTGTTGTTCGCTTGCTACGTCCTGCCCGAGTCTGTAACCGCATGGACTACAGCACGCCAGGCCTCCCTGTCCCTCACTATTTCCCAGAGTCTTTCCAAGTGTGTGTCTGTTGAATCGGTGATGCTATCCAACCATCTCTAGGGCTTGTTAAAAGGCCTAAAATTCAGGTACTTGAAGCTACCCCATAAGCTGTCTTCCAGCTAAACACCCACATTCCTCCAGTCATTCTTTCTAGGATGACCTTCCCATCCTGAGCACTGCCTCGGTTTACAAGGTCTATCGGAGTATAACCCTGCAGGCCCCGACTCCCTAAATGGTGCTCTTCGGCCCCATGTGTGGCCTCAAGAGCTGCTAGAGTCCTACTGCTTCCTCTACCCTTGGAGGGACAAATCTCTACTGGTCCTCAGAATGAACCCACTTGGTTGGCAAAACACACTGGTACCCACGGCAGGAAGTGGGGCTGAGTTGGCACTCCTTTCCACTGAATGGATGGGGAAACAGGCCTTGGGAAGAGGTGGCTGGCCAGGCACCCTGCTCCTCTGGGGCTCTCGAACCTGGCATGGTGCTCCCTAGGCCCAGAGCCCTGGGCAGCATGCGGACTGAGGTCTGAGTCTGACTCCTCTGCCTCTGTGTCCCTGCTTCTTCCCACACATAGAGGGCTGGCAGGAGGGGAGGACCAGTTGGTCGGCCCCCAGGGTGGCCCCCAGGTGGCAGCCGAGGCCTAAGGCAAGCAGGCTGTTGGTTTGCTACCTCCGTGAGAAGGCAGCATTCCTAGGGTCCCAGCGACCCCTTGGAGGATGGTGTCCGATGATGGCCCCTCACTACGCTCCCCGACAG
Seq C2 exon
GGACGCTGCAGGTCCGCCTCCTGGGCTGTGAGCAGCTGCTGATAGCGGTGCCTGGACGTTCCCCCGCGGCCGCGCTGGCCGGGAGCCCCTCCCAAGGCTGGCTTCGGAGCAGAGCCAAGCAGCAGCGTGGGGGAGGCGAGCTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195:ENSBTAT00000013461:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.1=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development