GgaINT0039188 @ galGal4
Intron Retention
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14127992-14131050:-
Coord C1 exon
chr8:14130837-14131050
Coord A exon
chr8:14128178-14130836
Coord C2 exon
chr8:14127992-14128177
Length
2659 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
AGTTGTTTGTCTTGTTCTAGGTA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCACAAGCAAGATTTAATGAATCAAGCCAGAAGTTGGACCTGTTAAAGTATTCACTGGAACAGAGATTGAATGAACTTCCTAAAAACCATCCCAAAAGTAGTATTATTATAGAGGAGCTTTCATTGGTCTCTTCACCCACATTAAGTCCTCGTCAAAGTGTAATATCTACTCAGAACCAATACAGTACACTGTCCAAACCAGCAGCTTTAACAG
Seq A exon
GTACGCTTTATGGAGTTCTTTTATTTTCACTACATGGTATAAAACTGGTCTTTAGTGTTAACTTTGCCTTTCTGGAAATCTTTCATTGTTGGTTGTGTGGTTTGGTCTGGTTTTTTTGTTTGTTTGTTTTTAGACAAAGGCATTTAAAGTCAATAATGCAACGTCTGTGATTCATTTGTTCACCATTTTATAATCCTGCTGAAAAAAAAAAGTGAAGTTCTGGCCTTAAGTTAGGTCACTGGGGAACAATATTATGAGCGTTAACTGCTTTTCACCTTCAGATTATCAAGCAGTTTTAAAGGTGGGCAAGTGCACCCACTGAGGTGCAGAAGGGTTAAGTGACTTCCTCTGGTCATACAACAAGTATGGCAGAGCTGGAAATAGGCACCCAGATTTCCTCCCAATCCCTGTTTTGCTCACTGGACTACAGTGGCTTCCCAGAAGGTGAGATTTATGTTACTAGAAACTTACTTATTTCTAAACCAAAGAGGGAGATCCTAACAAAAATGCACAGAGCTATCAAAGCCCCTATTAATGGATAGACTTAGCCTACTTTGAGGGAACATACTTACAAGCTTTATGCAATTTCTCAAAGTTGGGTTCACCTGAAATTATTGTCCTTCATTAGAAGTAAACTTTTCAAACAGATGAGCCAGACTTTTAACAGAACTTCTAAGTGTTTTCCTGAAGTATTTTGCTCTTAAAGCAAATAAAAATTTTGAACACTTGAAGATATGTTGCTTTACTAAATATATTTATTAAGTGGCCACAAATGAATTGCTACTACAGACAGAGTTTGGTTTGTTTCCTAAACAGTTCTATAAGTAACTATTAAACCAACTATCAACAGAGGAAAAAGTTTTACAATCTCTAACTTGAAGGTTACTCTCTTCAAGTGTGTATAACTGATGCCAGAATTTAGTTTTCAAGTAGGGTTCTATTTTAAAAGAAGGAGGAGGAACTCTTCTGCCAAGCTGCAGCAATAATGGACAAGACTACTTGCCCTACATTTTGTTACCAAAAGTAACCGAGGGCAAAAAGCATCAGAACCTTGGACAACTGTGAGCCCTTGTGAGGACGCTGAGAGGAGAGATTGTATTTGACAAAAAAGTTCCCCCTCAAATGATCTGTGATGTGCATGGCACATCATGCCTTTTTTTACAACAGCCTTTTTTAGTCTTTTTGTAAAAGATAATCATGGGTCATATACATTGCAGTGACTAACTCCTCTCTGAACACAACCAATAGGTACATATTAAGGTATATACTGGTACTTTCTAATAGGAATTATCAAAACAGAGCTACATCCTTGTAGAGCTCTTAATTTGTCACTTTCATATTAACTACACAGAACCTTTATATTGAACTAGATTTAGCAGTGTCTTTGTATTTTGCCTCTAACACTTTGTGAAATATAGATGGATGCTACTGTCATACTATTTTAAACGCTCCAATGGGACTTTCTTGTATGTCTCTCATTCTACAAGATTATGATCTTTCTGCATATTAATTCATTGGGGTTTTTTTCTAAACAGTTTTGGAATGAAGTATTGTTTTATTTTTTAAACTGTCTGGGGAGCCAACAGAATCCTTCTGTGTATACCGTTATGCTGTTCTCAGAAACACAAGCTGTCACTAATGATTGTTAGAACCTTACAAGATGGAATATGATCTCAGATTGGTCTGTCAGAATCTGTTTTGTGGGCTATAATATTGCCAGGCCATGTGTAGGTTTGGTCTGATTTAGCTGTCTGTTACAAAAGTGTATATTTAAGTTTTGCAGTTCTGTATACATAGAAGCTATGCTACCCTAAGAGCTAAGAGTCACCCTAAGAGGTGACTACATGGTTTTGAACTAATTTCACCACTTCTAATAGTCAATTTCATCACTGTTAGTTGTGTCATAGCTGTACAGATGCTATCTTTACAGGATACGGCAAGCCATCCGTTATGTTCAGATGCTGCTGTGCTGCTGGAGGAAGCTCTTTCAAATTAAAACCACAGCCTCTTCCTCAGTTGGTTGAAGATGTTGAAGAATAGCTTCTCAGCTGTCTCAGCGTTCATAAGTCCCAATTCAGTAAAGTTCTAACAATTCAATGATTGTAAATTATCTACTAATTCAAACGGGACTTAAGCAGCCAGCAGGCAAATTTCATTTCTTGTTTTATTTTAAACATGAAGTCTCAACAGTCAGTGTGTTCATGTTAATTATCTAAGCAATCTATTCCAGTATTGCTTGCTTATTATCCAATATTACTTGGTTATGTAAAACTCAAGGAAAACTGATAGTGTCCCATGAGCAATGTTAAATTGGTCACTTTAGAAAGTGCTTCATCTTAGAACTTGAACCCGAGTCAGTTAGATTCTTAACAGAAGACAGGTTTTTCTGAGGCTAAATTATAGAACAAAAACTGGTTTTGTGGCATTGTGGTGAACTGTCGCTTCCTTCTAGAAGGCTGACTCTCACATACTTCACTTTTTTTTAATGCTTACTTTCAGGTTTGTCGATCTTAAATCCATTGCTTGTTTTTTATCTGATCTCTATTATACCCAGCACGGTTTCCAATATGAGCTATTGCCATAATATCAATCATTAGTCATTCACTTGGCACATTTGAGCACAGAAATTTTTGACAACTAGTTGTTTGTCTTGTTCTAG
Seq C2 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0218511=HR1=PD(43.8=44.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]