DreINT0016698 @ danRer10
Intron Retention
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25347210-25349723:-
Coord C1 exon
chr6:25349510-25349723
Coord A exon
chr6:25347396-25349509
Coord C2 exon
chr6:25347210-25347395
Length
2114 bp
Sequences
Splice sites
5' ss Seq
CCGGTAACA
5' ss Score
5.92
3' ss Seq
TTTCTGTTGTAAATCCACAGGCA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GCTCAAGCCCGCTTGAATGAGTCTAGTCAGAAGCTGGACTTGCTGAAGTTTTCTCTGGAGCAGAGGCTCAGCGAACTGCCCAAAAATCACCCAAAGGGCACCCTGATCATGGAGGAGTTAGCAATGGTGGCCTCCCCTCCTAACAGTCCCCGCCAAAGCATCATGTCCACCAGCAACCAGTACAGCACTGTGGCCAAACCTGCTGCCCTGACCG
Seq A exon
GTAACAAAACATACATACTGCACAGTCACATGATAAACCAGTGGATTTGAACACGTTGTTTACTGGTACCATTTCAGCTGGGTTTTAGAAATGATAGCCTAAAACCTGTTCACACTTGATGCAACAACAACAGTGAAGTCAATCTTAAAACCATTTACACTTAGTATTTATAAGGCGAATTCAAATTAAGTGCACTCCAGTGCAGTTGGTGATGGATTTTTTTCATTCATAAAATAAAGGGTATATATTATTTGAAGTTTTGTAAACAGCCATAGAAGAAGGAACAATGAACTAGTGAATGATCAAATGAATGAATGGTGTGTTTGAAACACAAATCAGCATATGTTTAATGAATCCTAAGAGATTTTGTTAACTCCTCGGAAAGTCAATTTCTCTAGAACTATATTATGCTTTAATACTTAAAATGTTCTAATGTCTTTTTAAAAATGCACTTTTTACAACCTTATTGACTGAGCAATTTTGTTTTATTAAAAAAAATCTAAGAAAATTAAATATGACCAGTAGAAATTGAAAAGAACATTAAGAACTAAAGTTTTTTGTTTGTTTGTTTTGTTAATCAAATATGTTTGAGCTTACCAATTTGTTGTTGTGCATGTGAAATCAATAAAAAAAATTGATGTTCTCTATGCATGTCTGATGATTTAATGTGTAATAACCCGAAAATATAGGCACAATTTGTAAAATTTCTTGATTAAAATATTCAAAATACACTAGAACAGTGCAATATATATATATATATATATATATATATATATATATATATATATATTGCTGACTTCGATTATCTCAAACGTTTTGAAGAATGTTCTAATCCAGAGAAATAAGTAGTTTGAATTCATGTAATGGTCCTGTGTCGGAATGCTAATGAATTCACACACCCTCAATTTTCCTTTTTAGTTTTATAGAAAACAGAGAAACACCAAAGACGTTTTAAAATGCTGTGCGTTTTATTAGACTGCACAGAGCAGCATTATAAATTAAACCTAAAATGTATTTAATTTGATAAAACAGTGCTGTTTCTTCCCCACATTATCATTAGCAAAAGAACTGAAGAGATTGACTGGTATAATAAAAGCTTTGTCCTTGTAGGGCTGCGTCACAATCGTCTCAATAGCAATTGCTTCAACTCTGTTGTTCTGGTGTCAAGGTAGTATAAAGCAAAGTAAGAATCAAATCAACCAGTCTTACTTTGCTTCATGCTCACTTGATAGTATGTTTTGGATTTATTTGCTTAACCAAGACAGCCAGACCTGAAGCATGCTAAATCTGTGATGGTGCTTCACAAAGAACTGCTAAAATGTGCAATTTCTGTGTTTGTCCAAATATGCAGGTCAGAGTTAATCTTACTTGACCAGATTTGATCTGTTCTATATCACAAAATTCGAAATTCACATGTATATGAAGGGAAGTCAAATGAACAAAAAGTCTAGTGTGACCATGGTTTAAGCCAGTAAGTTTTCTTCTTTAAAGTTCATTAATGTTTTTATTTTTATTTTTAAAAATGGCGCCCCCAACAGTACTGGAGTACATTTCAGTCACACACTTGCATTGCACAGGATGTCTGGTGTCTTCTACTTGTAGATAGAAAACATACCTCATTAATAAAATAATTGTTTTGTTTCTGTGAATGGATCCATTGCATTTTTCATTTATAGTCTGTTCTCTGCACTTTCACTTCAGCGTCCAGTGTGAACAGGCCCTGTAGTCTTTTTTAACAACACATGGTACTGTACACTCAGCCCTATTTTAGCAGTGAACAACAGCTGTCTGCTATAGGCATGTAGAAACTACATTTGACTTTTCACATTGTCAACACACACAGCCTCAGCAGACCCTCCCCCACCCTTAGCTTTATCACACACAACTTTGACCTTCACCCTGAAGGAGAACCAAGAGGGCTTACGCTACCATTATAGACCCATAGTGCTTTCCATATAAGGCATTGTAACCATCGCTTGTGTCTTGAAATAGACACTTGTAATTGTTTGCACACTTATTATCTTGTGTTAATCAGAATGGATGTGTTTGGTGATTTACATCTCGAATCATGCAGAGTTTTGGCTCTGAGCAGGGTTTCTGTTGTAAATCCACAG
Seq C2 exon
GCACATTAGACGTGAGGCTCATGGGCTGTCAGGACCTTCTGGAGAACGTCCCGGGTCGCTCGAAGACAGCATCTGTTTCTCTGCCCGGCTGGAGCCCTAGTGAAGCACGCTCTTCATTTATGAGCCGAGGAAACAAGAACAAATCTGGCAGCAGCAGAACCCTCTCCAAGTCTGATGATCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293:ENSDART00000169030:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(33.3=40.3),PF0218511=HR1=PD(43.8=44.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]