GgaINT0039188 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:15886714-15889772:-
Coord C1 exon
chr8:15889559-15889772
Coord A exon
chr8:15886900-15889558
Coord C2 exon
chr8:15886714-15886899
Length
2659 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
AGTTGTTTGTCTTGTTCTAGGTA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCACAAGCAAGATTTAATGAATCAAGCCAGAAGTTGGACCTGTTAAAGTATTCACTGGAACAGAGATTGAATGAACTTCCTAAAAACCATCCCAAAAGTAGTATTATTATAGAGGAGCTTTCATTGGTCTCTTCACCCACATTAAGTCCTCGTCAAAGTGTAATATCTACTCAGAACCAATACAGTACACTGTCCAAACCAGCAGCTTTAACAG
Seq A exon
GTACGCTTTATGGAGTTCTTTTATTTTCACTACATGGTATAAAACTGGTCTTTAGTGTTAACTTTGCCTTTCTGGAAATCTTTCATTGTTGGTTGTGTGGTTTGGTCTGGTTTTTTTGTTTGTTTGTTTTTAGACAAAGGCATTTAAAGTCAATAATGCAACGTCTGTGATTCATTTGTTCACCATTTTATAATCCTGCTGAAAAAAAAAAGTGAAGTTCTGGCCTTAAGTTAGGTCACTGGGGAACAATATTATGAGCGTTAACTGCTTTTCACCTTCAGATTATCAAGCAGTTTTAAAGGTGGGCAAGTGCACCCACTGAGGTGCAGAAGGGTTAAGTGACTTCCTCTGGTCATACAACAAGTATGGCAGAGCTGGAAATAGGCACCCAGATTTCCTCCCAATCCCTGTTTTGCTCACTGGACTACAGTGGCTTCCCAGAAGGTGAGATTTATGTTACTAGAAACTTACTTATTTCTAAACCAAAGAGGGAGATCCTAACAAAAATGCACAGAGCTATCAAAGCCCCTATTAATGGATAGACTTAGCCTACTTTGAGGGAACATACTTACAAGCTTTATGCAATTTCTCAAAGTTGGGTTCACCTGAAATTATTGTCCTTCATTAGAAGTAAACTTTTCAAACAGATGAGCCAGACTTTTAACAGAACTTCTAAGTGTTTTCCTGAAGTATTTTGCTCTTAAAGCAAATAAAAATTTTGAACACTTGAAGATATGTTGCTTTACTAAATATATTTATTAAGTGGCCACAAATGAATTGCTACTACAGACAGAGTTTGGTTTGTTTCCTAAACAGTTCTATAAGTAACTATTAAACCAACTATCAACAGAGGAAAAAGTTTTACAATCTCTAACTTGAAGGTTACTCTCTTCAAGTGTGTATAACTGATGCCAGAATTTAGTTTTCAAGTAGGGTTCTATTTTAAAAGAAGGAGGAGGAACTCTTCTGCCAAGCTGCAGCAATAATGGACAAGACTACTTGCCCTACATTTTGTTACCAAAAGTAACCGAGGGCAAAAAGCATCAGAACCTTGGACAACTGTGAGCCCTTGTGAGGACGCTGAGAGGAGAGATTGTATTTGACAAAAAAGTTCCCCCTCAAATGATCTGTGATGTGCATGGCACATCATGCCTTTTTTTACAACAGCCTTTTTTAGTCTTTTTGTAAAAGATAATCATGGGTCATATACATTGCAGTGACTAACTCCTCTCTGAACACAACCAATAGGTACATATTAAGGTATATACTGGTACTTTCTAATAGGAATTATCAAAACAGAGCTACATCCTTGTAGAGCTCTTAATTTGTCACTTTCATATTAACTACACAGAACCTTTATATTGAACTAGATTTAGCAGTGTCTTTGTATTTTGCCTCTAACACTTTGTGAAATATAGATGGATGCTACTGTCATACTATTTTAAACGCTCCAATGGGACTTTCTTGTATGTCTCTCATTCTACAAGATTATGATCTTTCTGCATATTAATTCATTGGGGTTTTTTTCTAAACAGTTTTGGAATGAAGTATTGTTTTATTTTTTAAACTGTCTGGGGAGCCAACAGAATCCTTCTGTGTATACCGTTATGCTGTTCTCAGAAACACAAGCTGTCACTAATGATTGTTAGAACCTTACAAGATGGAATATGATCTCAGATTGGTCTGTCAGAATCTGTTTTGTGGGCTATAATATTGCCAGGCCATGTGTAGGTTTGGTCTGATTTAGCTGTCTGTTACAAAAGTGTATATTTAAGTTTTGCAGTTCTGTATACATAGAAGCTATGCTACCCTAAGAGCTAAGAGTCACCCTAAGAGGTGACTACATGGTTTTGAACTAATTTCACCACTTCTAATAGTCAATTTCATCACTGTTAGTTGTGTCATAGCTGTACAGATGCTATCTTTACAGGATACGGCAAGCCATCCGTTATGTTCAGATGCTGCTGTGCTGCTGGAGGAAGCTCTTTCAAATTAAAACCACAGCCTCTTCCTCAGTTGGTTGAAGATGTTGAAGAATAGCTTCTCAGCTGTCTCAGCGTTCATAAGTCCCAATTCAGTAAAGTTCTAACAATTCAATGATTGTAAATTATCTACTAATTCAAACGGGACTTAAGCAGCCAGCAGGCAAATTTCATTTCTTGTTTTATTTTAAACATGAAGTCTCAACAGTCAGTGTGTTCATGTTAATTATCTAAGCAATCTATTCCAGTATTGCTTGCTTATTATCCAATATTACTTGGTTATGTAAAACTCAAGGAAAACTGATAGTGTCCCATGAGCAATGTTAAATTGGTCACTTTAGAAAGTGCTTCATCTTAGAACTTGAACCCGAGTCAGTTAGATTCTTAACAGAAGACAGGTTTTTCTGAGGCTAAATTATAGAACAAAAACTGGTTTTGTGGCATTGTGGTGAACTGTCGCTTCCTTCTAGAAGGCTGACTCTCACATACTTCACTTTTTTTTAATGCTTACTTTCAGGTTTGTCGATCTTAAATCCATTGCTTGTTTTTTATCTGATCTCTATTATACCCAGCACGGTTTCCAATATGAGCTATTGCCATAATATCAATCATTAGTCATTCACTTGGCACATTTGAGCACAGAAATTTTTGACAACTAGTTGTTTGTCTTGTTCTAG
Seq C2 exon
GTACCCTGGAAGTTAGGCTAATGGGCTGCCAAGACATCTTAGAAAATGTCCCTGGTCGATCGAAAGCCACATCAGTTACTCTACCTGGTTGGAGTCCAAATGAAGTCAGAACAACTTTCATGGGCAGAACCACTAAAGCTAAAGCTGGGATTAGTAAAAACCTTCTGAAAACTGATGACTTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(33.3=40.3),PF0218511=HR1=PD(43.8=44.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]