BtaINT0112898 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36504191-36506706:+
Coord C1 exon
chr2:36504191-36504367
Coord A exon
chr2:36504368-36506673
Coord C2 exon
chr2:36506674-36506706
Length
2306 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATCTTTGTATTTGATTTTAGATA
3' ss Score
8.82
Exon sequences
Seq C1 exon
ATGAAACCATAAAGTGGTTTGATGGAACTCCCACAGATCAATCAAACTGGGGTATTCGGAAGCCAGAGGTGTACCACTTCAAACCCCATCTGTGTGTTGCCCTGAGGATTCCTGAAGGAGTGTGGCAATTATCCTCGTGTCAAGACAAAAAGGGATTTATATGTAAAATGGAAGCAG
Seq A exon
GTGGGTAAAGTTCAAAGGTAAATCCTCATTTGATTCCACCCTGACTAAAGCTGACCCACCTCTTTACACTTAAAACTTTTAAAATTCAGGTATTTAGAGAGTATTCAAATAGATTCTGACATTATTGTCTTGTTTTACATCAAATAATTTACAGAACATACCAGCTTTCTCTCATACGCAGAAAAAAATCATTATAAATCAAGTCAAAAACTATGACTTTCTTGTGTCATCTGGCTGTTATATTAATGGGCAAAAAAACAGTTTTACCTCAAGCAAATAGAGCTGGAAATGCAAACAAGCAACTCTCATTTTGGCAACTGCAACTCAGAATTTTAAAGTATCATTTTTGGTCACAGGAAATATAATTCAGGTCTAGGTATCCTTACTGTGGATAAGTAGATGTGTTTTTCTACTGCATGGCATAGTATATTATAAATCATATTTTAACTTCATCTGGAGCTATATACTCAGTTTGTGGTGATGAAAATTTAGAAATATAAGCCAGAAAATTCTAGTCAATTGCAAATGATAGAGATTTCTAAGACAGTAAGGATCATTAACAGTGGAAGATGTTTATAATAATCACAACATTTTCTAAATGCCAGTATTATAAAGAAGGGGGGATTGATGTGGCCTGGGCTCCTGAAGAAGACTTTAGAGAAGGGATGAGGCTTTGTAATAGTAAAAGATAAGGAGAATAGAGGAGGGAAAGAATACTGGACAAACGTTTCAGTAAGACTAAAGACAGAAATAAAGAATGAACTTAAGGCTAGCCCACATTAGGTGGTGATGGGGGTAAAAGCATATTTCTGTAGGCTCCATCCACAGGGAGTGCTGGGTTAAAGAGCTGAACTTCATGGTGAAGGACACAGGGAACCCCTAAGTGCTCTGTAGATACCTACAGTGGATGTAAGGGAGACAGTTGTAATTTGAGCACAAATGAACAAAATGAACAAAAATGGAGGGAGGAAATGGGAAAAGAGAATCATCAGTCTTTAGTGACTGATTAGATACTGGCAATGAAAAAGCAAAAACTGGTAGGTGTAGGAACCAAAGTTTGAGGTTCCAAAAGTGTGGGTATCAGCTCTGTGTGGAAAACATGGCTAACCTAATAAATAGCATGCCTAAGCAACCACTAGCATTCAGCTATCAAGAACAAATTAGAAACACCTCATATCTGTTCAAATCTTTAAGGTTTCCTGTACTACACAGGGCACCTCTTTTACCCTTCACGACAAGTTTTCAAGGCAGTGAAACAGATACAACACTCCCATGTTACAGATGAGAAAAGTACTTGTCCAAACTGAGGCCACAGGGAGGACTACATTCCAAATTTTCTGATTCCATGTGTCCCTTCTATACCTGCCCACTGCCTCCATCCAGAGAATGAATACCCATTCATCAGTCTTTCTTTGAAAAGTATCCTTACACATACACAATACTACGTTTTCAATAATATTATGTAAAATCATACAGTATTGTTTTTAAATTGCAAAATCAAGGTTTTATATATATATATATGTATATATATATATATATATATAACTGTGTTTTTGTTACTGGTAACAATGTTGACATTTCTTCATGGGTCTTAAGTACTGCACCAAGTAGTCCTCCACTGACAAGTCCTTTACTTCTCTTTCTCTGGGTCATTCCCTGTATATTTCTCTGGATCTTTGCCTAGATAAAAAATAGCAGAGTTTAAATTCTGATATAGAGTCTTCCTTGAAAAGATACATTCTTTCAGTAGAAGATCCTCAAACAGGAACCCTCAAACTTTTTGAATGGAAGAGCTATTACTCATTTCCCAAGATTCTTGAGACATGAGAAGGTACTCATTTTTTAAATCTGCAAAAAGCCAGGGAGGTTATCATTACTGGACCAACTCCACATCAGATCCCAACAAAACTGAGTTCCTTGTAGGCAGGGACTATATTTTACTCATATTTCTATTGCAGCACAGTGTTGAGACTGGATGAGGATTCTTCAGCTTAAAAAAAGGCAGTGTATGTCTTTGTGAGCACTAGTATTGATGATTAAATAAATCAGGGGTCAGCAAATTTTTCTTGTAAAGGATTAAATAGTAAATATTTCAGGATATAGGAGCCATATGGTCTCTGTCACACTTCAACTGTAGCAAAAAAGCAGCCAAAGACAACAGAAACATGGCTGAGTTCTAATAAAACATTATTTATAAAAACATGTGCTCAGATTTGATCCATGGGCCATCATTTTCTGAAGTAATGACATAACTTTGCTGAATTAAAAGGAAAATTTCATCTCAATATCTTTGTATTTGATTTTAG
Seq C2 exon
ATATTCACACAGTAAAGAAGCATCCAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515:ENSBTAT00000046112:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.5=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]