RnoINT0112559 @ rn6
Intron Retention
Gene
ENSRNOG00000008129 | Pla2r1
Description
phospholipase A2 receptor 1 [Source:RGD Symbol;Acc:1309777]
Coordinates
chr3:46490369-46492754:-
Coord C1 exon
chr3:46492578-46492754
Coord A exon
chr3:46490402-46492577
Coord C2 exon
chr3:46490369-46490401
Length
2176 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTGTGTTGTTTTATTTCAGGCA
3' ss Score
10.28
Exon sequences
Seq C1 exon
ACAAAACCTTAAGGTGGTTTGACGGAGCAGCCACAGAGCAGTCAAACTGGGGCGTACGGAAGCCAGACATGGACCACCTCAAGCCCCATCCGTGTGTTGTCCTGAGGATCCCTGAAGGAGTATGGCAGTCTACCCCATGCGAAGACAAAACGGGATTCATTTGTAAAGTGGAAGCAG
Seq A exon
GTGTGTGTAAAGGGAGAAGGAATTTCCTCACGCTGACTCGTTCCTGGCTAATGCTGGCCCACCATGTCAGAGAGTTTTTCAGATAGATTCTGGCACAGTCATCTTGCTCTACATCACACAAGTCAGAACATGTCAGCTCCTCTAAGATGAAGGGGGGGGAAATCATTCATCACATAAATGAAATAAGACACACAGTTTACACCAAGAATAGCTGTGCTGTACTGTGCTGTGAGAAAGCTTTGGTCTTAGGGAATATCTTGTTTGTTTGGTGCATCTGTTATGGATAGGTAAGTGTAATTCTGCCCCGTGAGTAGATTATGCCAAGAAGGTCATATTTAACTCCATCCTGAACAGTACAGTTTATGGCAATGGAAATGAGTTTTAGAAAGCGAAACCAGAAAATTCTAGCCGCTTGCAAACAACAGCTGAGAGTTGTGAGCAAGCCCTCCGTGAGAACCATTGGTGTTTATGATAATCAGGCAGTTCCTAGATTCTTGTTTTGCAAGAAGGAAGGTTGGGGTGCCTCTGGGCTCCTGGATAAGGCGGCAGAGAAATGAGACTCTGGGTTCTGAAGGAGGAGGGGAGTTTAGAGCGCTGGGACAGAGTAGGAAAGGTATTTTAGCCCAAAGGCTCAGCACTGCTAAAAGCAGCCATGGAGAATGCGCTAGACTGGAGTACAATATTCGTGGTGGGAGTTAAGTTGACCAATGAGGCTGGATCCAGTGCACAGCTAAGGAGCCGAGATTCCCACAGAGAGATACACTCACTAGATGCAAAGGACAGCGTTGGTGATTTGAATGACATGACATGACTGAAAACACGGGGAGAGGCTGGAAGACTGAGTAGACCCTGGCAGGGAAAGAGAAAAAGCTGCCAGTGGAAGCTGGGATGCTTGAACCCCAAAGTGCGGCAACATTGTAGCAGACAAAAGGTAACCGCATGCTCACACTTTCACTACCACATAAGCATCAAGAGCAGATTGGAAACACCACACATCAGTGTCCAGTTTTATAGCACCCCAACTTTTCAAGGCCCTGGAGCAGTTAAAACATACTCATCCTATAGGTGAGAAAGTGCCTGTCCAAACAGGCTGCACTGAGGACCAGATTTCTTTTTCCTTTGTTTGTTTTGTTTTCAGTGTAGGTTTCTGGGGTAGATCTACTCGGTTGCGGGAACTCACTATAAAGTCTAGACTGACCTCAGACTCCCAGCAACCCTTCTTCTCCAACCTTACAGGTGCCTCTACAGCTCTGTGGCGCTCTCTCTGGATCCTTTCCTAGACCAAAAATTGCAGAGGTTAGCCCTTAGAGTAGTCTTCTTAAATGAGAAAAGCTCTTACAGTCAATAAGCCCTGAAACAGAGACTGTGTCACTTTGGAATGAAGAGTCCATACATTCATCTCCAGACTTCTGGGAATCATAGATGGGAAAGGTGCTAGCTTGTAACAATGTTACAACAGACAGGCAGGGCTTTTGTTGCTAGGCAAACTCTCCATCAAGTCCCAACAAAACGATGACTTCCTATTAGTGAGGACCATGTCTTGCCTATATTTCTGTTGTGATATGTGATAGTGCTGAGACTACATGGAAATTTGTTGGCTTTAGTAAATGAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAGAGGGAGGGAGGGAAGGAGGGAAGAGAAAAAAACACGTGTGTTATGAACACCAATACTTATCAATGTAAATGGCTTATGGACTGGTAATATGTCTCAGCTGGTAAAAGCACTTGCTGCCAAGCCTGGATCCTGTTGTTATAAAATTATACTGTATGACATCCTACAGGATCCAAACCCTGGAACCCACATGGTAGAAAGAGAGAATCCCCATGTCATCTGACCTACACACACATAACATGAGGCATGCACCATGGCATAAGAGTTCTCCCCCTCCCCCTCACTCACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACAATACATGAATGACTGAGCATCAGAGCTCCAATAAAACGTCATTCATAAAAACAGGCCACCAGACGTGATACGTGAGCAGTAGTTTGGTTCCTGCTTTGTTGGAACACTGACAGACTTTGCTGGATTTAAAGACGCTGGATTTACTTGTGTGTTGTTTTATTTCAG
Seq C2 exon
GCATCCCAGCTGTAACAGCACATCCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008129:ENSRNOT00000011003:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.5=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]