HsaINT0126461 @ hg19
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1, 180kDa [Source:HGNC Symbol;Acc:9042]
Coordinates
chr2:160798638-160801593:-
Coord C1 exon
chr2:160801417-160801593
Coord A exon
chr2:160798671-160801416
Coord C2 exon
chr2:160798638-160798670
Length
2746 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ATTTTTGTATTTGATTTTAGATA
3' ss Score
8.64
Exon sequences
Seq C1 exon
ATGAAACCATAAAGTGGTTTGATGGAACTCCCACAGACCAGTCAAACTGGGGCATTCGGAAGCCAGACACAGACTACTTCAAGCCCCATCATTGTGTTGCCTTGAGGATCCCTGAAGGATTATGGCAGCTATCCCCGTGTCAAGAAAAAAAAGGCTTTATATGTAAAATGGAGGCAG
Seq A exon
GTAGGTAAAGTCAGAGAGTAATTCTTCATTTTGATTCTACCTTAACTAATGTTGACTGACTTCTTTAGCATTTAAAGGTTTTAAAATCCAAGTTGAGAGAGTATTCAGATAGATTCTGACATTATTGTTGTGTTCTGCACCAAACAAGTCAGAGAATAGTTCAGCTCCTTCTTTCTCTGATATGAGAAAAAAAATCATTATAAGTCAACTCAAAGACTATGATTTTTCTTGTGTCACCCAGGTTGATCACCTAATGGGCAAAAAATCATTTTCCCTCAAGCAAATAGAACTAGGAATGTAAACCAGCAACCTTCATTCTGGTGACTGCTACTCAGAATTTTTAAGGTTTATGTTTGGCCTCAGGAAATATAATCTAGGCTTATGTATATTTGCTGTAGACAAGAAGATGTGATTCCCTGTTGCAAGCATAATGTGTCATAAAAGTCACATTTTAACTTAATCATCAGTAACATACTTAGTGTTTAGTAATTAAAAAAAACAATAATTTTAGAAATCTAAGCTAGAAAATTCTAGTCACTGATGGTGGGAAAATGTCTATAATAATTACAGCAATTTCTAGATGTCAGTATTATAAAGGAGGGATTGCTGTGGCCTGTACTGCTAGAGAAGGCTTCAGACATGAGGTTTTAGGATCCCAAAGGATGAAGAGAATTATAGAAGCTGGAACAGAGGAGGAAAAGGCCCAGCCTGATTAAAGGCAGCAACTAAGAATGTGTTTCAATTAGAGCAAAGGGCTCACGTCAGGGGGTGATGGGAATAAAATTGGATGGTAATGTAGGATCCTTTCACAGAGTGCCAGGCTAAAGAGCTGAACTTTGTGGTGGAAGAGACAGACCCCCTATGTGCTCTGTAGACACCTGTGATGAAGTAGAACTCATGAGGATATGAAGAGAAACATTTGTAATTTGAGTGATTAAACTAGGAACGAAAGAGGAGGGGAGAAATAGGAAGAGAGAATCACCGGCCCTGTTGACTGATTTGAGCTGGGAATGAAGAAGAAAACACTGCAGGTGTGGGCACCAATGTTTGAAACCCCCACAGTGTGAGTCTCAACTCTGTGTGAGAGAAAAAAAAAAAAAAAGAAAAACATGGCTAAGCCTGATAAATAATGTGCCCAAGTTATCACTAGCTTTTAAATATCAAGAACAAATCAGAAACACCTCATGTCTTACAGGACTTTAAAGTTTCCTATAATGCAGATGACACCTGTTTCATCCTTCGCAGCAGCTTTCCAAGGTAGTGGAGCAATTTAAATATCCCCATTTTACAGACGGGAAAAGTGCCTGTGCAAACTGAGGCTACATCAAGGACTACAGAGAAAACTCTAAGTTTTCTAAGTGCTCTTTCCATGCCGCCCACTGCTTCTATCCTGAGAACAAACACTCTTAACAGTCTTTCTTAAAGATGTATCTTTATGTTTAAAGTGATGGTTATCCCAAGTACACTATACAAATTATATGACTATATTCAATTATCACTTGTGTTCTGAAAATTTGTGCATCTGATATGCATCAATTTAAAAGAAGTGTCTTCATAAAAACACAATAATACATATTTTCGACAGTTTAATGCAACGTTAAATGGCATTGTTTTTATATTAAAAGAACAAGTCTGGGCCGGGGGTGGTGGCTCACGCCTGTAAATCCCAGCACTTTGGGAGGCAGAGGCAGCTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACTCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGATGGCACACACCCGTAATCCCAGATACTAAGGAAGCTGAGGCAAGAGAATTGCTTGAACCCAGGGCAGAGGTTGCAGTGAGCCGAGATCACGCCATTGTACTCTGGCCCGGGCAACAGAGTGAGACTTCGCCTCAAAAAAAAAAAAAAAAGAACAAGTCTGGTTTTAAAAGTATGGTTTTGCTATTAGTAACAGTGTTGTGATTTTTTTCATGTCTATCAGAGTGAATGAGCATCAGTAGGACATCAAGGCAGTTCTTTTGCTCACAAATCCATTTCTTCATCTTCCTCTGGTTCATTCTCTATACCTTTCTCTGGATCTTTACCTAGATCAAAAATAGAAGAGTTCACATTTTGATATAACATCTACTTAAAAGATGTGTTTTTACAGTAGAAAGTTTTAAAACAGAAACTCTCTAACTTTTTGGATGGAGAAGCTGTTGCTCATTCCCCAAGACCCATGAGATCACAAAGGTGAGAAGATGCTGATTTAAAAATCCTTACAAAGAGTCAGGCAGATTATCATTGCTGGACAAACTCCATATAAGATCCCAACAAAACTGTGAGTTCCTTGTATGCAGGGTTTATATTTTACTCTATATTTATTGCAGCACAGTGCTGGGACTGAATAGAAACTTCTTGGCTTAAAAAAAACAAGCAGGGTGTATGTTTGTGAGCACTAATAACGATGATTACAATAAATCAAAGGTCAGCAAACTTTTTCTGTAAAGGGCCAGCTAGTAAACATTTTAGGCTTTGGGAGCCATATGGTCTCTGTTACATGCCATTGTAGCAGGAAAGCAGCTGTAACAATACATCAATGAATGAGTGTGGCTAAGTTCCAGTAAAACATTTTTTATAAAAATAGGGTCATGGGCCATAGTTTGCTGATCCCTGAGTAAGTAATGACATATTTTTGCTGAATTAAAAGAAAAACCTCATTTTAATTTTTGTATTTGATTTTAG
Seq C2 exon
ATATTCACACTGCAGAGGCGCTGCCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246-PLA2R1:NM_001195641:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.5=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)