GgaINT0050871 @ galGal4
Intron Retention
Gene
ENSGALG00000011149 | PLA2R1
Description
secretory phospholipase A2 receptor precursor [Source:RefSeq peptide;Acc:NP_996866]
Coordinates
chr7:21361445-21362297:+
Coord C1 exon
chr7:21361445-21361621
Coord A exon
chr7:21361622-21362267
Coord C2 exon
chr7:21362268-21362297
Length
646 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AGTTCTGGGTTCTATTTCAGATC
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATGAAACTGTCTCCTGGTTTGATGGCTCTCCCTTAAATTATTCTAACTGGGGCATCAGGGAGCCTGAATTTGATCATCTCAAGGGGAATTTCTGTATCAGCCTGAGGACTGCGGATGGTGTATGGCAAATATCTCCGTGCAGAGAAATAAAGGGATTTGTATGTAAAAAGGATGCAG
Seq A exon
GTATGTGCTTCCATTTGAAGGGAACTGATCATGTTCTCATAGCCGTTGTTTTATATTTTCTCTATTGCTTGCTTACTTTCTTAGTTTTCATTTAAATAGTCTTTTTGCTTCCTATTAGAGAAAATACCTGTGAAAAACAAACCAGCCAGGGTAGCCTTCTGAGGAGTCTGGGCATCCTTTTTCGTTACTGCATGCTGTGACAAACTTTCTCTTGTGCATGTGAGCAGAGCCCTTGGTACAGGCAGCTCCAGTGAGCAGATACATTCATGAGGGAGCTGAAGTGTTCCGAGAGTCCACTGCTGGAATCACTGCTGGACCCAGTAGCTCAGTTCATCCACCACTGCATACTTCTGCTTATGCACGTGTGCTTTCTGCAGTGGGCAAATGCTGCTATTCATCTATGCCACAATGTCAGTTAATATATTCCAGTAAATCTTCAGAGATTTGTAGACAGGCAACAGGCTAGGTCATGTTTTACTTGGCCTGTAGTAATCCTGTTGACATGGGTGAAGTTCAACAAAGAACAGCTGGCTCTTGCATGTTTGTCGGTAGATTTTCTTCTGAGTATCAGTGATACACTGAGTGTATATACTAAATTTTGCTAGTACTATGGATAATTTTCTGACAGTTCTGGGTTCTATTTCAG
Seq C2 exon
ATCTTGATGCAGCAGAACCATCTAAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011149:ENSGALT00000033111:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(50.5=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCTCCTGGTTTGATGGC
R:
TTTAGATGGTTCTGCTGCATCA
Band lengths:
198-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]