BtaINT0114835 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105671147-105671786:+
Coord C1 exon
chr11:105671147-105671295
Coord A exon
chr11:105671296-105671633
Coord C2 exon
chr11:105671634-105671786
Length
338 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TCAGTGCTGCGGCCCGGTAGGTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
CGGATGTGGCCAGGTCAATGGGGGCAAAGGTGGTGATCGCCATTGACGTGGGCAGCCGGGATGAGACAGACCTCACCAACTACGGGGATGCGCTCTCGGGATGGTGGCTCCTGTGGAAGCGCTGGAATCCCTTGGCCACGAAGGTCAAG
Seq A exon
GTGGGCCCAGCCTTGCCTGCTCTGGCCGCTCCTCCCCACGCCCTGGTGCCCACGTCCCTGAAACGGGCAGGGAGGGAGTAGTGTCTTCCAGGCTCTGGGTCCAGCCTGGGGGATGGTCCCTGCCTGCCCAGGACCAGCTCTGGGGAGGGGGACATGTGTAAAGACTCCAGACCCCCTGGTGGATGCCCAGCCCCCTCCCCCAGGTCCAGCAGAAATAGTCTCCCCATGGGGGAGGGGAGGGGCTGGAGGGGCCAGGGAGGAAACAGGGGCTGTGCCCAGACGGAGGCCAGGAGCCGCGTGGGGCCAGGACAGCCACACTCAGTGCTGCGGCCCGGTAG
Seq C2 exon
GTGCTGAACATGGCTGAGATCCAGACACGCCTGGCCTACGTGTGCTGTGTCCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACCTGCGCCCTCCGATTGACAGCTATGGCACCCTGGAGTTCAGCAAGTTTGATGAGATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(2.4=8.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGTGGCCAGGTCAATG
R:
ACAAATCTCATCAAACTTGCTGAACT
Band lengths:
302-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development