RnoINT0114539 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2259392-2259957:+
Coord C1 exon
chr3:2259392-2259540
Coord A exon
chr3:2259541-2259804
Coord C2 exon
chr3:2259805-2259957
Length
264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
GGCTCAAGCACTCTTGGCAGGTG
3' ss Score
2.79
Exon sequences
Seq C1 exon
CGGATGTGGCAAGATCCATGGGGGCAAAGGTTGTGATTGCCATCGATGTTGGCAGCCGGGACGAGACGGACCTCACCAACTACGGTGATGCTTTGTCTGGATGGTGGCTGCTTTGGAAACGCTGGAACCCCTTGGCCACAAAAGTCAAG
Seq A exon
GTAGATTTGGTACCAAATGGACTAGATACCCTCTCTGGGGCTTATCTCTTGTCCCCCAAGTTCAGAGTCCAGCAGATCTGGGTCACCTATTTGTACAGCTCCCCAGACACTGGGACTAACTTTGGGACAAGATGGGCTGAAACAGGGTTTCATGGATCACAAAGGTCACATCTTCAGGGCTCTGGCTTAGACCCCATCATGTTCTTGGGCCAGGAGGGACAGAGGAGGGAAGGCCAGGGTAGGAGGCTCAAGCACTCTTGGCAG
Seq C2 exon
GTGTTGAACATGGCAGAGATTCAGACACGACTGGCCTATGTATGCTGCGTCCGGCAGCTGGAGATGGTGAAGAACAGCGACTACTGTGAGTACCTGAGGCCTCCCATCGACAGCTACCGAACCCTGGACTTCGGCAAGTTTGATGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(2.4=8.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGTGGCAAGATCCATGG
R:
TCAAACTTGCCGAAGTCCAGG
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]