DreINT0116815 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24543604-24544826:-
Coord C1 exon
chr5:24544678-24544826
Coord A exon
chr5:24543757-24544677
Coord C2 exon
chr5:24543604-24543756
Length
921 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
TCTTTTTTCATATCCTCCAGGTG
3' ss Score
12.32
Exon sequences
Seq C1 exon
CTGACACAGCTCGTTCGATGGGTGCCAAGCTGGTGATTGCAGTTGATGTGGGCAGTCAGGATGAAACTGATCTCACTAACTATGGAGACTCTTTATCTGGATGGTGGCTGCTTTGGAAACGCTTGAACCCACTGGCAGAAAAAGTGAAG
Seq A exon
GTCAGGTATATGGTGATGACTAAATAAGGAGTTTAATAAGAGTATTCAATCATATCTGTAATTTGTGTTTATGGAAAATCCATAAATTGTGTGTGCGCAGTTTATTCTTATTTGATTTTACTTGTGCTTTTTATAAGGGATTAAAGCACAATATGCAAGTTTTAGTTTCATTAAAATATCCATAAACCACTAGAACAGTGTTCTTGCAATGTACTTGCATTGTCCTAAATGTGTCAAAGAATGTTCAAATCCAGAGAATTTTTAAGTGGTGATACAGACCATGTCCTGTGTTGCCATGTTATGACGTCATGTAATGAAGATGACAGATCACATGATTCCCCACACTGTCACAGCATCATCAAACTATGCCTTTGTTTGTTGTGAAAACGCACCCTCTTGTGGTGAAAATACATACTGTGCCTTTAAAAAGTAAAGAAAAAATACATTTGCATATAGATTAGTTACTTTCATACATTTGTATATCAAATATCACATATAAATTAAATATAAAACGTGTTGTGTATATATTTAAAATACATTAAATACTGTATATTTTAAAGGCAATTTATTCCATGATTTTTAATTCCTTTGTTTGACATATTTAGTTAGTTAACACACCACCTTCGTATTTATTGGCCTTTTGACATACAGACAAAGTACACAAACTTTAAAAAAAATTAAAATAATAAAGCCTAAATTATAATAAAGAATTATTATTAAAAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATTTTTATTTTATATGTTTTCTTTTATTTAATTAACTGCTATTATTATTCCATTTTTAAGCTTTTGTGAAATAAAAAAAAATATTGCATTCCAACATTCACTGAACACAGCTCTTCTTTTTTCATATCCTCCAG
Seq C2 exon
GTGTTGAACATGGCAGAGATTCAGACCCGCCTGGCGTATGTGTGTTCTGTGCGTCAGCTTGAGCTGGTCAAAGACAGTGATTACTGCGAGTACCTGCGACCGCCCATAGATCGCTATGGCACTTTGGACTTTGGCAAATTTGATGAGATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(2.4=8.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACACAGCTCGTTCGATGG
R:
AGCAATCTCATCAAATTTGCCA
Band lengths:
302-1223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]