GgaINT0125242 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2084979-2086700:+
Coord C1 exon
chr17:2084979-2085127
Coord A exon
chr17:2085128-2086547
Coord C2 exon
chr17:2086548-2086700
Length
1420 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GTGTCTGTCCTGCTTGGCAGGTG
3' ss Score
11.05
Exon sequences
Seq C1 exon
CTGATGTGGCGAGGTCCATGGGTGCAAAGGTGGTGATAGCAATCGATGTGGGGAGCCGGGATGAGACCAACCTCACCAACTACGGTGACTGCTTGTCCGGCTGGTGGCTGCTGTGGAAGAGGTGGAATCCACTGGCTGAGAAAGTCAAG
Seq A exon
GTACCACAGACTGCACTGCAATATCACCTAGTTTTATGGGCAGAGCAGGAAGCTTTCTCTTGATTATTCAGGAACCAGCCTATGACAGATCAAATCGTTTCTTGGATTTGAGCACGTGCTTGTGGGTGAAGCAAGACAGGCAGTGCTGTGACACTGAGGGAAATGGACCACCACAGAAGAGGGGTAGAGCCCTGCCTGGGGAGGGGAGTGTGGGCTGCAGAGGTGCTGGCTTTGTGAGAGCACAGAAACCTTTTCTTGCAGGTGGCTAGTTTGATAAAGTCAGAATTTACAGACTTCACTGATGAAGTAATAACTTTGTCCAGTTCTGTGCTGTGTACTAACATCTCTGAGCTGCTGACTAAGGAGGTTTCAGCAGTAGGCACTAATTAACATTACAACTGCTGCTCATGTATACACACTGGGCTGCAGAGTATGATTTTTTTTTCTTGCTGCATGCAGTCAGGCCAGCTCTATTGTATATCCTCCTGCATTTCCTAAATCATCTGGCTTTGCAGTGCTCCCCCAAGGGAATGCTGTTTTTTTTCCTTCTCCTAACTGCTATTAACGTGTTGCCTTGTGGCAATTGGAATTAAAATACATGCTTCCCAAAGTCAGGGAAAATATTACAAACTGTGGGTACTGCTCTGTAATCTCAAGTTTTTCCTCTAATTACTCTCTTCCCTGAAAAGCTCTCATCTCCCTGAGGAGGAGCCTGGCTTTCCTTCTGGAGGCAGTGCAGCTGCTGAGCGCCCTGCTTTGTCTCAGCAGAGCTGACCATGCTGCTTCCAGCATGTAGTGGGATTGTGTGGCTGCTGAAATAAAAGACCTTGGCTCCTCTTAGTAGTGTCCAGTGAAATATTACGAGTCTCCTCTCCTTAAATCTGTGGAACACCGGAGCAGGTTGTCCAGAGGGGCTGTGGAGAAGTGTCCACTTGTGGAGCTGCACCAAAACCCAGCTGATGGGGTCCTGCACAGCCTTCTCAGCTGCCCCTGCCCGAGCAGGAGGCTTAGACCAGGCAGTATTGAGAGGTCTCTGTCCAGCTCAGCGAGTCTGTGGTTCTGTGAAGTCTCTGCCCTGGTACATAGAGGGCATCACTGATTTCTGCTGTGAAGGACCACTGTGCCCCTCTCACCTCAGCTCACATCTTTCTTAAGTTACCACCCCTGTCTTGAAATGGAAGATTCTATTCAATCTTGTGCTGCAGAAACGTGAAGGCAGTTCTCTTTCTGCTCTTGGTTGTGGACACTCCATCCACACTGCCTGCGAAACAGAGGGGCTGACGTTTGAAGCTTCAGCAGGCTTCTGCGTGCTTCTGGTCTAAGCCTGATAGATACCTTGGCTATTCTCTTTGCAGAGAATACAGAGCACGCTCTGACATTTCTGACCCAGTCACAGTGGTGTGTCTGTCCTGCTTGGCAG
Seq C2 exon
GTGCCGAACATGGCAGAGATCCAAACACGGCTCGCGTACGTGTGCTGCGTGCGGCAGCTGGAGATGGTGAAGAGCAGCGACTACTGCGAGTACATCCGGCCACCCATCGACCGCTACGGCACGCTGGATTTTGGGAAGTTTGATGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(2.4=8.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGTGGCGAGGTCCATG
R:
ACAGATCTCATCAAACTTCCCA
Band lengths:
302-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]