BtaINT0114838 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105672298-105672696:+
Coord C1 exon
chr11:105672298-105672382
Coord A exon
chr11:105672383-105672592
Coord C2 exon
chr11:105672593-105672696
Length
210 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGGCCCTGCTCTCTGCCCAGATG
3' ss Score
8.67
Exon sequences
Seq C1 exon
GTCCTCACCTGCCCCAACGCCTCCTTCACGGACCTTGCTGAGATTGTATCACGTATTGAGCCTGCCAAGGTGGCTGCAGGGGACG
Seq A exon
GTGAGTTGGATCCCGAGACATACATGCCCAACAGCTGGGAGCGGTGGTGGCAATGTCCCCTGCTGACCCTCACTCTCAATAAGCTGCCCTGGGCACCAGGCTGGCTCTGGCAGCCCCTAGACCTGGTTGGCTGCACAGCGGGACCCCTGCCTGTGTATGGCCCCTGCCCCTGCTCAGGAGGTGACCCACATGGCCCTGCTCTCTGCCCAG
Seq C2 exon
ATGAATCTGACTACCAGACTGAGTATGAGGAGGTGCTGCTGGGAGGCCCCAAGGACGCGTACGTTGACTTCCAAAGCGCCCCAGCCGACCGGGGCTCCGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.543
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCACCTGCCCCAACG
R:
GGCGCTTTGGAAGTCAACGTA
Band lengths:
164-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development