MmuINT0123210 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25052553-25053498:+
Coord C1 exon
chr2:25052553-25052637
Coord A exon
chr2:25052638-25053394
Coord C2 exon
chr2:25053395-25053498
Length
757 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGCCCTCTCTTCTGCTCTAGATG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTGTTCACCTGCCCCAATTCCTCCTTCACGGACCTTGCTGAGATTGTGTCACGGATTGAGCCGGCCAAGGTGGCTGCAGTGGATG
Seq A exon
GTGAGTAGATGTCTGGAGAGTGGGACAGGAAAGAGGTGGTAGGACTCCACTACACTAGGCCCTCACTCTTGCCCTTGAAGAAGTCACCAACTCTTGAGCTCTACTGGCCAAGAAGCTCAGTACTGCTTCTCCATGTGTCAAGACCCAGAGCCCATCTGTCCAGTTCCCACCACATGGGATTGCCTCCTAGGCCACTCAGGCTTCCCCCTCATCACTCCATAGAGCATCCTAACCACACCACAGACCTTAAGGGGAACCTACTGGCAGAGGAGGCCTTAGGAGGCCCGAGGGCCACATCCAACAACATGGCTCTGATCTACAACCCTGCAATGGGGCCCCCCATCTTGCAACAGAGCAACATGTTCTGCAGAATTCCCTGCTGCATGTACCATCTTAAAGAAGAACTTGAAAGGTGCTCTGGAGTCTTCCCAGGGTGAGAGCCCCAACACTGAGCTGAGTTTGTGCTGGTCTCCTTACACAACTCTGACCCGGCCCCCATGTGTGGTTAGGGAGTAGGTGAGGAGGGTCATGTTTTTGTGAAAAACACACAGGACACATTGTGGCGTGAGATGAACAAAGGCGCCTGTGAAGTGTTGCTGGGTCTGGAGGTTCCTCTGGCAGCCCTGGCACTGGGCAGCTCTCTGGGAACTGTTACAGTGGGGCTGGGCATGGCCATGTTCTGCTTCCCTTTTAGCCTTGCTTGGCACAGCCACTGTCCTTGGAGAGAGGACCAATGGAGCCCTCTCTTCTGCTCTAG
Seq C2 exon
ATGAGTCTGACTATCAGACCGAGTATGAGGAGGAACTGCCAGCCATCCCCAAGGAAACGTATGCTGACTTCCAGAGCACTGGGATTGAGCTAGACTCTGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.886
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCACCTGCCCCAATTCC
R:
GAGTCTAGCTCAATCCCAGTGC
Band lengths:
182-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types