RnoINT0114542 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2260324-2261344:+
Coord C1 exon
chr3:2260324-2260408
Coord A exon
chr3:2260409-2261240
Coord C2 exon
chr3:2261241-2261344
Length
832 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGCCCTTTCTTCTGCTCCAGATG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTGTTCACCTGTCCCAATTCCTCCTTCACGGACCTCGCTGAGATTGTGTCACGGATTGAGCCAGCCAAAGTGGCTGCAGTGGATG
Seq A exon
GTGAGTTAGATCTCGGGAAAGTGGGACAGGAGAGAAGTGGTCGGGCCTCCACTATGCTAGACCCTCACTCTTGCCCTTGAAGAGGTCACCCACTCTGAGCTCTCCAAGCCAAGAAGCTCAGGGCTGCATCTCCATTGTGTGAAGACCCAGAGCCCACCTGTCCAGCGTAGGGTTCCCGCAGCATGGGGATGCCTCCTAGGCCACTCGGCTCCATCTCTCTATATAGCATCCTAGCCACACCACAGACCTTTAGGGGAGCCACTGGTAGAGCTTGTAGGAGACCTGAGGGCCACATCCAACAGCCTCCGCTCTGACCTACAGCCCTGCACAGGGGCCATCAACCACCATCCCCACCCCTATCTTGCAACCGAGCAGCATGTCCTGCAAAATTCCCCGCTGCATGTTCCACCTTAAAGAAGAACTTGAAAGGTGCCCTGGAGTCTTCCCAGGGTGAGAGCCCCAGGCACTGAACTGACTTTGTGTTGGTATCTCCTTATACAGCCCTGACCAGCCCTCCATGCATGGTTAGGGAGTAGGGAAGGAAGGCCAAGTTACTCCATGTTTTTGTGGGAAACACACAGGACACATTGTGGAGTGAGATGAACAAAGGCAAATGAGATGTGGGGACTGTCACCATGGGGCCAGCATGGCCATGTGAGATGTGTTGCTGGCCCTGCTGCAGCCTCCTCTGGTAGCCCTGGGACTGAATGGCTGTGTGTAGGGACTGTCACCATGGGGCCAGGATGACCATGTCCTGCCTCAGCATGAGCTTTGCTGGGCACAGCCACTGTCCTTGGAGAGAAGACCAATGTAGCCCTTTCTTCTGCTCCAG
Seq C2 exon
ATGAGTCTGACTATCAGACAGAGTACGAGGAAGAGCTGCCAGCCATCCCCAAGGAAACCTATGCTGACTTCCAGAGCACTGGGATTGAGCTGGACTCTGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGTCCCAATTCCTCCT
R:
GTCAGAGTCCAGCTCAATCCC
Band lengths:
182-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]