DreINT0116818 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24542820-24543124:-
Coord C1 exon
chr5:24543043-24543124
Coord A exon
chr5:24542957-24543042
Coord C2 exon
chr5:24542820-24542956
Length
86 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTACATTCTGACACACACAGAGG
3' ss Score
3.4
Exon sequences
Seq C1 exon
GCGACATGTCCAAATGCTTCTTTCACTGATCTGGCAGAAATAGTATCCCGGATAGAGCCAGTTAAGCAGGCCGTTGTGGATG
Seq A exon
GTGAGGAATAGGCCATAATAATAAATGTCCTTTCTTTCATGTCATTCTCTCATTTTGTACTGTTTCTTACATTCTGACACACACAG
Seq C2 exon
AGGAGTCCGAGTACCAGACAGACTATGATGAAGATGCAGTGCTGTCAGACTTCGATCTGTCCAATCCAAACAGCGAACACAGTGATGCCCAAGAAGATGAGGATGAAGAAGAAGAGACTGCAGATACAGCTGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACATGTCCAAATGCTTCT
R:
TCTTGGGCATCACTGTGTTCG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]