BtaINT0115660 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101662401-101662829:+
Coord C1 exon
chr11:101662401-101662493
Coord A exon
chr11:101662494-101662708
Coord C2 exon
chr11:101662709-101662829
Length
215 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CCACCGTCTTGTTTTGCCAGCTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GACATCGTGAACAGGGAGTCGGACACGGATGTCTGGAAGACCATCTTGTCAGAGGTCCGCTTTGTACACGTGAACACCTCGGCCATCCTCAAG
Seq A exon
GTCAGTGACACCGCCTCCTGGTCCTGCCCGGAGGGACAGACTGAAGGGGGGCCATGGGGGGTTGCGGGGTCTCTGTAACTGCTCAGAACTGAAACCTGGCGTGAAGCTCCCTGAAGGAGAGCCACTGCCCTTGTGGGTGACCTGGGGTGGGGTCCCCCCAGCTGGGCGGGCCCGGGCCCTCCATTAACGATCCCCCCACCGTCTTGTTTTGCCAG
Seq C2 exon
CTGAGTGGAGTGCCCCTCCCGGACTGGGGCTTTCGGCAGCTGGAAGTGGTTGGGGAGAAGCTGTTTCGGGGCTACCACGAGAGCACTGTGTGGAACGTGGAGGAGCACCGCTACGGCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(17.0=100)
A:
NA
C2:
PF0281514=MIR=PD(21.0=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGTGAACAGGGAGTCG
R:
TAGCGGTGCTCCTCCACG
Band lengths:
206-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development