RnoINT0115402 @ rn6
Intron Retention
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11267255-11267701:+
Coord C1 exon
chr3:11267255-11267347
Coord A exon
chr3:11267348-11267580
Coord C2 exon
chr3:11267581-11267701
Length
233 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTCTCTCTTGGTTTTACTAGCTG
3' ss Score
6.38
Exon sequences
Seq C1 exon
GACATTGTAAACAGAGAGTCCAACCAGGATACCTGGAAGACTATCTTGTCAGAAGTGCGCTTTGTGCATGTGAATACATCTGCCATCTTGAAG
Seq A exon
GTAAAGGGTAGCTAGCTCGCAGTATGCCTGTCAGGCCCAGCATCGCCCAGACTATTCCTGGAGCTGGTCAGGCCTGTGCTCACATAGGCTAGCTACATGATAAAGGTCACCCTGTGTTTTATAATACAGGCAGGGGGAAAGGAATCCTAGGAAGACCTGGGGCGGGGATCTGCTGACACATCAATGGAGTTAGCCAATTCTGTCACGCTCATTGTCTCTCTTGGTTTTACTAG
Seq C2 exon
CTGAGCGGGGCTCACCTCCCTGACTGGGGATTTCGGCAGTTGGAGGTGGTTGGGGAGAAGTTGTCCCTCGGCCCCCACGAGAGCATGGTATGGAATGTGGAAGAGCACCGCTATGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477:ENSRNOT00000015214:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(17.0=100)
A:
NA
C2:
PF0281514=MIR=PD(21.0=90.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTAAACAGAGAGTCCAACCA
R:
TCTGCCATAGCGGTGCTCTTC
Band lengths:
212-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]