BtaINT0116217 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26717375-26717796:-
Coord C1 exon
chr2:26717759-26717796
Coord A exon
chr2:26717453-26717758
Coord C2 exon
chr2:26717375-26717452
Length
306 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CCTGAAACTATTTTACTCAGATT
3' ss Score
2.71
Exon sequences
Seq C1 exon
GAGCAAAAAGATTGTCCTTGATTTTTCCCTATTTAAAG
Seq A exon
GTAACCTGTCTCTAGTTCACTAATCATGCAGACTTAATACAATTCTCTGTTTGAGGTGGCAGTCTATATTTGGTTTTTAAAATACTGTATTATATAATGGCTAAACCTTTATGTCTTTTCTACAAGATGCAGTCTAATCTTTCAAAGAAAATAATCATGTAATTTATGTCATAGAAGTAAATATTAAAATAAATTCAGACTACATTTCTTGTTTATGCTCCACAGAGTTTTGTTTTGTTTTCTCTTCAGAAATTTATGAAAAATCTTTGCTGTTTTAATGTGTTTGCCTGAAACTATTTTACTCAG
Seq C2 exon
ATTGAAGTATTGACGCCATGGGAATAAAGGTTCAGCGTCCTAGATGTTTTTTTGACATCGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789:ENSBTAT00000040072:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]